Machine learning models for drug–target interactions: current knowledge and future directions
Highlights•Chemical descriptors in modeling drug-target interaction.•Modeling approaches
in drug-target interaction prediction.•Machine learning and deep learning models in drug …
in drug-target interaction prediction.•Machine learning and deep learning models in drug …
Interpretation of quantitative structure–activity relationship models: past, present, and future
P Polishchuk - Journal of Chemical Information and Modeling, 2017 - ACS Publications
This paper is an overview of the most significant and impactful interpretation approaches of
quantitative structure–activity relationship (QSAR) models, their development, and …
quantitative structure–activity relationship (QSAR) models, their development, and …
ChemDes: an integrated web-based platform for molecular descriptor and fingerprint computation
Background Molecular descriptors and fingerprints have been routinely used in QSAR/SAR
analysis, virtual drug screening, compound search/ranking, drug ADME/T prediction and …
analysis, virtual drug screening, compound search/ranking, drug ADME/T prediction and …
Use of machine learning approaches for novel drug discovery
abstract Introduction: The use of computational tools in the early stages of drug development
has increased in recent decades. Machine learning (ML) approaches have been of special …
has increased in recent decades. Machine learning (ML) approaches have been of special …
Comparing multiple machine learning algorithms and metrics for estrogen receptor binding prediction
Many chemicals that disrupt endocrine function have been linked to a variety of adverse
biological outcomes. However, screening for endocrine disruption using in vitro or in vivo …
biological outcomes. However, screening for endocrine disruption using in vitro or in vivo …
PyBioMed: a python library for various molecular representations of chemicals, proteins and DNAs and their interactions
Background With the increasing development of biotechnology and informatics technology,
publicly available data in chemistry and biology are undergoing explosive growth. Such …
publicly available data in chemistry and biology are undergoing explosive growth. Such …
How to approach machine learning-based prediction of drug/compound–target interactions
The identification of drug/compound–target interactions (DTIs) constitutes the basis of drug
discovery, for which computational predictive approaches have been developed. As a …
discovery, for which computational predictive approaches have been developed. As a …
Deep confidence: a computationally efficient framework for calculating reliable prediction errors for deep neural networks
Deep learning architectures have proved versatile in a number of drug discovery
applications, including the modeling of in vitro compound activity. While controlling for …
applications, including the modeling of in vitro compound activity. While controlling for …
Polypharmacology modelling using proteochemometrics (PCM): recent methodological developments, applications to target families, and future prospects
Proteochemometric (PCM) modelling is a computational method to model the bioactivity of
multiple ligands against multiple related protein targets simultaneously. Hence it has been …
multiple ligands against multiple related protein targets simultaneously. Hence it has been …
Active learning for computational chemogenomics
Aim: Computational chemogenomics models the compound–protein interaction space,
typically for drug discovery, where existing methods predominantly either incorporate …
typically for drug discovery, where existing methods predominantly either incorporate …