A comprehensive survey of recent advancements in molecular communication

N Farsad, HB Yilmaz, A Eckford… - … Surveys & Tutorials, 2016 - ieeexplore.ieee.org
With much advancement in the field of nanotechnology, bioengineering, and synthetic
biology over the past decade, microscales and nanoscales devices are becoming a reality …

Genetic circuit design automation with Cello 2.0

TS Jones, SMD Oliveira, CJ Myers, CA Voigt… - Nature protocols, 2022 - nature.com
Cells interact with their environment, communicate among themselves, track time and make
decisions through functions controlled by natural regulatory genetic circuits consisting of …

Genetic circuit design automation

AAK Nielsen, BS Der, J Shin, P Vaidyanathan… - Science, 2016 - science.org
INTRODUCTION Cells respond to their environment, make decisions, build structures, and
coordinate tasks. Underlying these processes are computational operations performed by …

Ribozyme-based insulator parts buffer synthetic circuits from genetic context

C Lou, B Stanton, YJ Chen, B Munsky, CA Voigt - Nature biotechnology, 2012 - nature.com
Synthetic genetic programs are built from circuits that integrate sensors and implement
temporal control of gene expression,,,. Transcriptional circuits are layered by using …

Biomolecular computing systems: principles, progress and potential

Y Benenson - Nature Reviews Genetics, 2012 - nature.com
The task of information processing, or computation, can be performed by natural and man-
made'devices'. Man-made computers are made from silicon chips, whereas …

The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology

M Galdzicki, KP Clancy, E Oberortner, M Pocock… - Nature …, 2014 - nature.com
The re-use of previously validated designs is critical to the evolution of synthetic biology from
a research discipline to an engineering practice. Here we describe the Synthetic Biology …

Perspective: The promise of multi-cellular engineered living systems

RD Kamm, R Bashir, N Arora, RD Dar, MU Gillette… - APL …, 2018 - pubs.aip.org
Recent technological breakthroughs in our ability to derive and differentiate induced
pluripotent stem cells, organoid biology, organ-on-chip assays, and 3-D bioprinting have all …

Foundations for the design and implementation of synthetic genetic circuits

AL Slusarczyk, A Lin, R Weiss - Nature Reviews Genetics, 2012 - nature.com
Synthetic gene circuits are designed to program new biological behaviour, dynamics and
logic control. For all but the simplest synthetic phenotypes, this requires a structured …

Organizing the aggregate: Languages for spatial computing

J Beal, S Dulman, K Usbeck, M Viroli… - Formal and Practical …, 2013 - igi-global.com
As the number of computing devices embedded into engineered systems continues to rise,
there is a widening gap between the needs of the user to control aggregates of devices and …

Design automation in synthetic biology

E Appleton, C Madsen, N Roehner… - Cold Spring Harbor …, 2017 - cshperspectives.cshlp.org
Design automation refers to a category of software tools for designing systems that work
together in a workflow for designing, building, testing, and analyzing systems with a target …