Autoencoders for unsupervised anomaly segmentation in brain MR images: a comparative study

C Baur, S Denner, B Wiestler, N Navab… - Medical Image …, 2021 - Elsevier
Deep unsupervised representation learning has recently led to new approaches in the field
of Unsupervised Anomaly Detection (UAD) in brain MRI. The main principle behind these …

Deep learning for brain MRI segmentation: state of the art and future directions

Z Akkus, A Galimzianova, A Hoogi, DL Rubin… - Journal of digital …, 2017 - Springer
Quantitative analysis of brain MRI is routine for many neurological diseases and conditions
and relies on accurate segmentation of structures of interest. Deep learning-based …

[HTML][HTML] SynthStrip: skull-strip** for any brain image

A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann - NeuroImage, 2022 - Elsevier
The removal of non-brain signal from magnetic resonance imaging (MRI) data, known as
skull-strip**, is an integral component of many neuroimage analysis streams. Despite their …

Flamby: Datasets and benchmarks for cross-silo federated learning in realistic healthcare settings

J Ogier du Terrail, SS Ayed, E Cyffers… - Advances in …, 2022 - proceedings.neurips.cc
Federated Learning (FL) is a novel approach enabling several clients holding sensitive data
to collaboratively train machine learning models, without centralizing data. The cross-silo FL …

Medical image synthesis for data augmentation and anonymization using generative adversarial networks

HC Shin, NA Tenenholtz, JK Rogers… - … and Synthesis in …, 2018 - Springer
Data diversity is critical to success when training deep learning models. Medical imaging
data sets are often imbalanced as pathologic findings are generally rare, which introduces …

Automated brain extraction of multisequence MRI using artificial neural networks

F Isensee, M Schell, I Pflueger, G Brugnara… - Human brain …, 2019 - Wiley Online Library
Brain extraction is a critical preprocessing step in the analysis of neuroimaging studies
conducted with magnetic resonance imaging (MRI) and influences the accuracy of …

Deep autoencoding models for unsupervised anomaly segmentation in brain MR images

C Baur, B Wiestler, S Albarqouni, N Navab - Brainlesion: Glioma, Multiple …, 2019 - Springer
Reliably modeling normality and differentiating abnormal appearances from normal cases is
a very appealing approach for detecting pathologies in medical images. A plethora of such …

[HTML][HTML] Efficient multi-scale 3D CNN with fully connected CRF for accurate brain lesion segmentation

K Kamnitsas, C Ledig, VFJ Newcombe… - Medical image …, 2017 - Elsevier
We propose a dual pathway, 11-layers deep, three-dimensional Convolutional Neural
Network for the challenging task of brain lesion segmentation. The devised architecture is …

Deep convolutional neural networks for brain image analysis on magnetic resonance imaging: a review

J Bernal, K Kushibar, DS Asfaw, S Valverde… - Artificial intelligence in …, 2019 - Elsevier
In recent years, deep convolutional neural networks (CNNs) have shown record-shattering
performance in a variety of computer vision problems, such as visual object recognition …

Deep MRI brain extraction: A 3D convolutional neural network for skull strip**

J Kleesiek, G Urban, A Hubert, D Schwarz… - NeuroImage, 2016 - Elsevier
Brain extraction from magnetic resonance imaging (MRI) is crucial for many neuroimaging
workflows. Current methods demonstrate good results on non-enhanced T1-weighted …