Immunogenicity risk assessment and mitigation for engineered antibody and protein therapeutics
PJ Carter, V Quarmby - Nature Reviews Drug Discovery, 2024 - nature.com
Remarkable progress has been made in recent decades in engineering antibodies and
other protein therapeutics, including enhancements to existing functions as well as the …
other protein therapeutics, including enhancements to existing functions as well as the …
[HTML][HTML] Nanobodies: from high-throughput identification to therapeutic development
The camelid single-domain antibody fragment, commonly referred to as a nanobody,
achieves the targeting power of conventional monoclonal antibodies (mAbs) at only a …
achieves the targeting power of conventional monoclonal antibodies (mAbs) at only a …
Biophysical cartography of the native and human-engineered antibody landscapes quantifies the plasticity of antibody developability
Designing effective monoclonal antibody (mAb) therapeutics faces a multi-parameter
optimization challenge known as “developability”, which reflects an antibody's ability to …
optimization challenge known as “developability”, which reflects an antibody's ability to …
Humatch-fast, gene-specific joint humanisation of antibody heavy and light chains
Antibodies are a popular and powerful class of therapeutic due to their ability to exhibit high
affinity and specificity to target proteins. However, the majority of antibody therapeutics are …
affinity and specificity to target proteins. However, the majority of antibody therapeutics are …
nanoBERT: a deep learning model for gene agnostic navigation of the nanobody mutational space
JT Hadsund, T Satława, B Janusz, L Shan… - Bioinformatics …, 2024 - academic.oup.com
Motivation Nanobodies are a subclass of immunoglobulins, whose binding site consists of
only one peptide chain, bestowing favorable biophysical properties. Recently, the first …
only one peptide chain, bestowing favorable biophysical properties. Recently, the first …
Improving antibody humanness prediction using patent data
We investigate the potential of patent data for improving the antibody humanness prediction
using a multi-stage, multi-loss training process. Humanness serves as a proxy for the …
using a multi-stage, multi-loss training process. Humanness serves as a proxy for the …
Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models
J Deng, M Gu, P Zhang, M Dong, T Liu… - Nature Machine …, 2024 - nature.com
Nanobodies can provide specific binding to divergent antigens, leading to many promising
therapeutic and detection applications in recent years. Traditional technologies of nanobody …
therapeutic and detection applications in recent years. Traditional technologies of nanobody …
Prediction of protein biophysical traits from limited data: a case study on nanobody thermostability through NanoMelt
In-silico prediction of protein biophysical traits is often hindered by the limited availability of
experimental data and their heterogeneity. Training on limited data can lead to overfitting …
experimental data and their heterogeneity. Training on limited data can lead to overfitting …
Prospects for the computational humanization of antibodies and nanobodies
GL Gordon, MIJ Raybould, A Wong… - Frontiers in …, 2024 - frontiersin.org
To be viable therapeutics, antibodies must be tolerated by the human immune system.
Rational approaches to reduce the risk of unwanted immunogenicity involve maximizing the …
Rational approaches to reduce the risk of unwanted immunogenicity involve maximizing the …
Applications and challenges in designing VHH-based bispecific antibodies: leveraging machine learning solutions
The development of bispecific antibodies that bind at least two different targets relies on
bringing together multiple binding domains with different binding properties and biophysical …
bringing together multiple binding domains with different binding properties and biophysical …