The evolution of supertrees

ORP Bininda-Emonds - Trends in ecology & evolution, 2004 - cell.com
Supertrees result from combining many smaller, overlap** phylogenetic trees into a
single, more comprehensive tree. As such, supertree construction is probably as old as the …

TreeCluster: Clustering biological sequences using phylogenetic trees

M Balaban, N Moshiri, U Mai, X Jia, S Mirarab - PloS one, 2019 - journals.plos.org
Clustering homologous sequences based on their similarity is a problem that appears in
many bioinformatics applications. The fact that sequences cluster is ultimately the result of …

[BUKU][B] Computational phylogenetics: an introduction to designing methods for phylogeny estimation

T Warnow - 2018 - books.google.com
A comprehensive account of both basic and advanced material in phylogeny estimation,
focusing on computational and statistical issues. No background in biology or computer …

Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches

SA Smith, JM Beaulieu, MJ Donoghue - BMC evolutionary biology, 2009 - Springer
Background Biology has increasingly recognized the necessity to build and utilize larger
phylogenies to address broad evolutionary questions. Large phylogenies have facilitated …

Comparison of phylogenetic trees defined on different but mutually overlap** sets of taxa: A review

W Li, A Koshkarov, N Tahiri - Ecology and Evolution, 2024 - Wiley Online Library
Phylogenetic trees represent the evolutionary relationships and ancestry of various species
or groups of organisms. Comparing these trees by measuring the distance between them is …

The performance of coalescent-based species tree estimation methods under models of missing data

M Nute, J Chou, EK Molloy, T Warnow - BMC genomics, 2018 - Springer
Background Estimation of species trees from multiple genes is complicated by processes
such as incomplete lineage sorting, gene duplication and loss, and horizontal gene transfer …

Introduction to data mining in bioinformatics

JTL Wang, MJ Zaki, HTT Toivonen… - Data mining in …, 2005 - Springer
The aim of this book is to introduce the reader to some of the best techniques for data mining
in bioinformatics in the hope that the reader will build on them to make new discoveries on …

Accepting partnership by submission? Morphological phylogenetics in a molecular millennium

RA Jenner - Systematic biology, 2004 - JSTOR
Organismic and morphological approaches to biology have lately come under attack from a
variety of corners in both teaching and research. However, the main moti-vations for these …

Butterfly wing pattern evolution is associated with changes in a Notch/Distal-less temporal pattern formation process

RD Reed, MS Serfas - Current Biology, 2004 - cell.com
In butterflies there is a class of" intervein" wing patterns that have lines of symmetry halfway
between wing veins. These patterns occur in a range of shapes, including eyespots …

Unraveling the evolutionary radiation of the thoracican barnacles using molecular and morphological evidence: a comparison of several divergence time estimation …

M Pérez-Losada, JT Høeg, KA Crandall - Systematic Biology, 2004 - academic.oup.com
The Thoracica includes the ordinary barnacles found along the sea shore and is the most
diverse and well-studied superorder of Cirripedia. However, although the literature abounds …