Review on the computational genome annotation of sequences obtained by next-generation sequencing
Simple Summary Due to the development of high-throughput sequencing technologies,
computational genome annotation of sequences has become one of the principal research …
computational genome annotation of sequences has become one of the principal research …
Plant genome sequence assembly in the era of long reads: Progress, challenges and future directions
Third-generation long-read sequencing is transforming plant genomics. Oxford Nanopore
Technologies and Pacific Biosciences are offering competing long-read sequencing …
Technologies and Pacific Biosciences are offering competing long-read sequencing …
Ancient gene linkages support ctenophores as sister to other animals
A central question in evolutionary biology is whether sponges or ctenophores (comb jellies)
are the sister group to all other animals. These alternative phylogenetic hypotheses imply …
are the sister group to all other animals. These alternative phylogenetic hypotheses imply …
Graph pangenome captures missing heritability and empowers tomato breeding
Missing heritability in genome-wide association studies defines a major problem in genetic
analyses of complex biological traits,. The solution to this problem is to identify all causal …
analyses of complex biological traits,. The solution to this problem is to identify all causal …
Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics
Complete and accurate reference genomes and annotations provide fundamental resources
for functional genomics and crop breeding. Here we report a de novo assembly and …
for functional genomics and crop breeding. Here we report a de novo assembly and …
Construction of a chromosome-scale long-read reference genome assembly for potato
Background Worldwide, the cultivated potato, Solanum tuberosum L., is the No. 1 vegetable
crop and a critical food security crop. The genome sequence of DM1–3 516 R44, a doubled …
crop and a critical food security crop. The genome sequence of DM1–3 516 R44, a doubled …
The complete and fully-phased diploid genome of a male Han Chinese
Since the release of the complete human genome, the priority of human genomic study has
now been shifting towards closing gaps in ethnic diversity. Here, we present a fully phased …
now been shifting towards closing gaps in ethnic diversity. Here, we present a fully phased …
InsectBase 2.0: a comprehensive gene resource for insects
Insects are the largest group of animals on the planet and have a huge impact on human life
by providing resources, transmitting diseases, and damaging agricultural crop production …
by providing resources, transmitting diseases, and damaging agricultural crop production …
Origins and evolution of extreme life span in Pacific Ocean rockfishes
Pacific Ocean rockfishes (genus Sebastes) exhibit extreme variation in life span, with some
species being among the most long-lived extant vertebrates. We de novo assembled the …
species being among the most long-lived extant vertebrates. We de novo assembled the …
TSEBRA: transcript selector for BRAKER
Background BRAKER is a suite of automatic pipelines, BRAKER1 and BRAKER2, for the
accurate annotation of protein-coding genes in eukaryotic genomes. Each pipeline trains …
accurate annotation of protein-coding genes in eukaryotic genomes. Each pipeline trains …