Clinical metagenomics
CY Chiu, SA Miller - Nature Reviews Genetics, 2019 - nature.com
Clinical metagenomic next-generation sequencing (mNGS), the comprehensive analysis of
microbial and host genetic material (DNA and RNA) in samples from patients, is rapidly …
microbial and host genetic material (DNA and RNA) in samples from patients, is rapidly …
The role of metagenomics and next-generation sequencing in infectious disease diagnosis
S Miller, C Chiu - Clinical chemistry, 2022 - academic.oup.com
Background Metagenomic next-generation sequencing (mNGS) for pathogen detection is
becoming increasingly available as a method to identify pathogens in cases of suspected …
becoming increasingly available as a method to identify pathogens in cases of suspected …
IDseq—An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring
Background Metagenomic next-generation sequencing (mNGS) has enabled the rapid,
unbiased detection and identification of microbes without pathogen-specific reagents …
unbiased detection and identification of microbes without pathogen-specific reagents …
High‐throughput metagenomics for identification of pathogens in the clinical settings
N Li, Q Cai, Q Miao, Z Song, Y Fang, B Hu - Small methods, 2021 - Wiley Online Library
The application of sequencing technology is shifting from research to clinical laboratories
owing to rapid technological developments and substantially reduced costs. However …
owing to rapid technological developments and substantially reduced costs. However …
[HTML][HTML] Metagenomics next-generation sequencing tests take the stage in the diagnosis of lower respiratory tract infections
Z Diao, D Han, R Zhang, J Li - Journal of advanced research, 2022 - Elsevier
Background Metagenomic next-generation sequencing (mNGS) has changed the diagnosis
landscape of lower respiratory tract infections (LRIs). With the development of newer …
landscape of lower respiratory tract infections (LRIs). With the development of newer …
Metagenomics for neurological infections—expanding our imagination
Over the past two decades, the diagnosis rate for patients with encephalitis has remained
poor despite advances in pathogen-specific testing such as PCR and antigen assays …
poor despite advances in pathogen-specific testing such as PCR and antigen assays …
Metagenomic next-generation sequencing for the diagnosis of suspected pneumonia in immunocompromised patients
JM Peng, B Du, HY Qin, Q Wang, Y Shi - Journal of Infection, 2021 - Elsevier
Objectives: To evaluate the potential of metagenomic next-generation sequencing (mNGS),
compared with that of comprehensive conventional microbiological tests (CMTs), of …
compared with that of comprehensive conventional microbiological tests (CMTs), of …
The diagnostic value of metagenomic next–generation sequencing in lower respiratory tract infection
Y Zheng, X Qiu, T Wang, J Zhang - Frontiers in cellular and infection …, 2021 - frontiersin.org
Lower respiratory tract infections are associated with high morbidity and mortality and
significant clinical harm. Due to the limited ability of traditional pathogen detection methods …
significant clinical harm. Due to the limited ability of traditional pathogen detection methods …
Application of metagenomic next-generation sequencing for bronchoalveolar lavage diagnostics in critically ill patients
Y Li, B Sun, X Tang, Y Liu, H He, X Li, R Wang… - European Journal of …, 2020 - Springer
The purpose of this study was to assess the value of metagenomic next-generation
sequencing (mNGS) of bronchoalveolar lavage fluid (BALF) for the diagnosis of severe …
sequencing (mNGS) of bronchoalveolar lavage fluid (BALF) for the diagnosis of severe …
Discovering disease-causing pathogens in resource-scarce Southeast Asia using a global metagenomic pathogen monitoring system
Understanding the regional pathogen landscape and surveillance of emerging pathogens is
key to mitigating epidemics. Challenges lie in resource-scarce settings, where outbreaks are …
key to mitigating epidemics. Challenges lie in resource-scarce settings, where outbreaks are …