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Lake sedimentary DNA research on past terrestrial and aquatic biodiversity: Overview and recommendations
The use of lake sedimentary DNA to track the long-term changes in both terrestrial and
aquatic biota is a rapidly advancing field in paleoecological research. Although largely …
aquatic biota is a rapidly advancing field in paleoecological research. Although largely …
[HTML][HTML] DNA barcoding in herbal medicine: Retrospective and prospective
S Chen, X Yin, J Han, W Sun, H Yao, J Song… - Journal of Pharmaceutical …, 2023 - Elsevier
DNA barcoding has been widely used for herb identification in recent decades, enabling
safety and innovation in the field of herbal medicine. In this article, we summarize recent …
safety and innovation in the field of herbal medicine. In this article, we summarize recent …
Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?
True fungi (Fungi) and fungus-like organisms (eg Mycetozoa, Oomycota) constitute the
second largest group of organisms based on global richness estimates, with around 3 …
second largest group of organisms based on global richness estimates, with around 3 …
A validation scale to determine the readiness of environmental DNA assays for routine species monitoring
The use of environmental DNA (eDNA) analysis for species monitoring requires rigorous
validation—from field sampling to the analysis of PCR‐based results—for meaningful …
validation—from field sampling to the analysis of PCR‐based results—for meaningful …
Can DNA-based ecosystem assessments quantify species abundance? Testing primer bias and biomass—sequence relationships with an innovative metabarcoding …
V Elbrecht, F Leese - PloS one, 2015 - journals.plos.org
Metabarcoding is an emerging genetic tool to rapidly assess biodiversity in ecosystems. It
involves high-throughput sequencing of a standard gene from an environmental sample and …
involves high-throughput sequencing of a standard gene from an environmental sample and …
A comprehensive and comparative evaluation of primers for metabarcoding eDNA from fish
S Zhang, J Zhao, M Yao - Methods in Ecology and Evolution, 2020 - Wiley Online Library
Accurate assessments of fish species diversity and community composition are essential for
understanding fish ecology and conservation management. Environmental DNA (eDNA) …
understanding fish ecology and conservation management. Environmental DNA (eDNA) …
Validation and development of COI metabarcoding primers for freshwater macroinvertebrate bioassessment
V Elbrecht, F Leese - Frontiers in Environmental Science, 2017 - frontiersin.org
A central challenge in the present era of biodiversity loss is to assess and manage human
impacts on freshwater ecosystems. Macroinvertebrates are an important group for such …
impacts on freshwater ecosystems. Macroinvertebrates are an important group for such …
Redesign of PCR primers for mitochondrial cytochrome c oxidase subunit I for marine invertebrates and application in all‐taxa biotic surveys
DNA barcoding is a powerful tool for species detection, identification and discovery.
Metazoan DNA barcoding is primarily based upon a specific region of the cytochrome c …
Metazoan DNA barcoding is primarily based upon a specific region of the cytochrome c …
The choice of universal primers and the characteristics of the species mixture determine when DNA metabarcoding can be quantitative
DNA metabarcoding is a technique used to survey biodiversity in many ecological settings,
but there are doubts about whether it can provide quantitative results, that is, the proportions …
but there are doubts about whether it can provide quantitative results, that is, the proportions …
Who is eating what: diet assessment using next generation sequencing
F Pompanon, BE Deagle, WOC Symondson… - Molecular …, 2012 - Wiley Online Library
The analysis of food webs and their dynamics facilitates understanding of the mechanistic
processes behind community ecology and ecosystem functions. Having accurate techniques …
processes behind community ecology and ecosystem functions. Having accurate techniques …