Lake sedimentary DNA research on past terrestrial and aquatic biodiversity: Overview and recommendations

E Capo, C Giguet-Covex, A Rouillard, K Nota… - Quaternary, 2021 - mdpi.com
The use of lake sedimentary DNA to track the long-term changes in both terrestrial and
aquatic biota is a rapidly advancing field in paleoecological research. Although largely …

[HTML][HTML] DNA barcoding in herbal medicine: Retrospective and prospective

S Chen, X Yin, J Han, W Sun, H Yao, J Song… - Journal of Pharmaceutical …, 2023 - Elsevier
DNA barcoding has been widely used for herb identification in recent decades, enabling
safety and innovation in the field of herbal medicine. In this article, we summarize recent …

Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?

R Lücking, MC Aime, B Robbertse, AN Miller… - IMA fungus, 2020 - Springer
True fungi (Fungi) and fungus-like organisms (eg Mycetozoa, Oomycota) constitute the
second largest group of organisms based on global richness estimates, with around 3 …

A validation scale to determine the readiness of environmental DNA assays for routine species monitoring

B Thalinger, K Deiner, LR Harper, HC Rees… - Environmental …, 2021 - Wiley Online Library
The use of environmental DNA (eDNA) analysis for species monitoring requires rigorous
validation—from field sampling to the analysis of PCR‐based results—for meaningful …

A comprehensive and comparative evaluation of primers for metabarcoding eDNA from fish

S Zhang, J Zhao, M Yao - Methods in Ecology and Evolution, 2020 - Wiley Online Library
Accurate assessments of fish species diversity and community composition are essential for
understanding fish ecology and conservation management. Environmental DNA (eDNA) …

Validation and development of COI metabarcoding primers for freshwater macroinvertebrate bioassessment

V Elbrecht, F Leese - Frontiers in Environmental Science, 2017 - frontiersin.org
A central challenge in the present era of biodiversity loss is to assess and manage human
impacts on freshwater ecosystems. Macroinvertebrates are an important group for such …

Redesign of PCR primers for mitochondrial cytochrome c oxidase subunit I for marine invertebrates and application in all‐taxa biotic surveys

J Geller, C Meyer, M Parker… - Molecular ecology …, 2013 - Wiley Online Library
DNA barcoding is a powerful tool for species detection, identification and discovery.
Metazoan DNA barcoding is primarily based upon a specific region of the cytochrome c …

The choice of universal primers and the characteristics of the species mixture determine when DNA metabarcoding can be quantitative

J Piñol, MA Senar, WOC Symondson - Molecular ecology, 2019 - Wiley Online Library
DNA metabarcoding is a technique used to survey biodiversity in many ecological settings,
but there are doubts about whether it can provide quantitative results, that is, the proportions …

Who is eating what: diet assessment using next generation sequencing

F Pompanon, BE Deagle, WOC Symondson… - Molecular …, 2012 - Wiley Online Library
The analysis of food webs and their dynamics facilitates understanding of the mechanistic
processes behind community ecology and ecosystem functions. Having accurate techniques …