Antigen presentation in cancer—mechanisms and clinical implications for immunotherapy

K Yang, A Halima, TA Chan - Nature Reviews Clinical Oncology, 2023 - nature.com
Over the past decade, the emergence of effective immunotherapies has revolutionized the
clinical management of many types of cancers. However, long-term durable tumour control …

Extracellular vesicles as next generation immunotherapeutics

DW Greening, R Xu, A Ale, CE Hagemeyer… - Seminars in Cancer …, 2023 - Elsevier
Extracellular vesicles (EVs) function as a mode of intercellular communication and
molecular transfer to elicit diverse biological/functional response. Accumulating evidence …

Most non-canonical proteins uniquely populate the proteome or immunopeptidome

MVR Cuevas, MP Hardy, J Hollý, É Bonneil, C Durette… - Cell reports, 2021 - cell.com
Combining RNA sequencing, ribosome profiling, and mass spectrometry, we elucidate the
contribution of non-canonical translation to the proteome and major histocompatibility …

HLA Ligand Atlas: a benign reference of HLA-presented peptides to improve T-cell-based cancer immunotherapy

A Marcu, L Bichmann, L Kuchenbecker… - Journal for …, 2021 - pmc.ncbi.nlm.nih.gov
Background The human leucocyte antigen (HLA) complex controls adaptive immunity by
presenting defined fractions of the intracellular and extracellular protein content to immune …

The SysteMHC Atlas v2. 0, an updated resource for mass spectrometry-based immunopeptidomics

X Huang, Z Gan, H Cui, T Lan, Y Liu… - Nucleic Acids …, 2024 - academic.oup.com
Abstract The SysteMHC Atlas v1. 0 was the first public repository dedicated to mass
spectrometry-based immunopeptidomics. Here we introduce a newly released version of the …

Unlocking the potential of microfluidics in mass spectrometry-based immunopeptidomics for tumor antigen discovery

C Stutzmann, J Peng, Z Wu, C Savoie, I Sirois… - Cell Reports …, 2023 - cell.com
The identification of tumor-specific antigens (TSAs) is critical for develo** effective cancer
immunotherapies. Mass spectrometry (MS)-based immunopeptidomics has emerged as a …

DeepRescore: leveraging deep learning to improve peptide identification in immunopeptidomics

K Li, A Jain, A Malovannaya, B Wen, B Zhang - Proteomics, 2020 - Wiley Online Library
The identification of major histocompatibility complex (MHC)‐binding peptides in mass
spectrometry (MS)‐based immunopeptideomics relies largely on database search engines …

[HTML][HTML] The origin and immune recognition of tumor-specific antigens

A Apavaloaei, MP Hardy, P Thibault, C Perreault - Cancers, 2020 - mdpi.com
Simple Summary Cancer immunology is a rapidly evolving field. In this context, this review
article has three objectives. First, to explain the genomic origin of tumor antigens and to …

[HTML][HTML] The biogenesis of the immunopeptidome

A Admon - Seminars in Immunology, 2023 - Elsevier
The immunopeptidome is the repertoire of peptides bound and presented by the MHC class
I, class II, and non-classical molecules. The peptides are produced by the degradation of …