Microbial diversity of hypersaline environments: a metagenomic approach

A Ventosa, RR de la Haba, C Sanchez-Porro… - Current Opinion in …, 2015 - Elsevier
Highlights•Metagenomics permitted a better knowledge of the microbial diversity of
hypersaline habitats.•Cellular life in hypersaline habitats is dominated by prokaryotes …

How viruses shape microbial plankton microdiversity

F Rodriguez-Valera, C Bellas - Annual Review of Marine …, 2024 - annualreviews.org
One major conundrum of modern microbiology is the large pangenome (gene pool) present
in microbes, which is much larger than those found in complex organisms such as humans …

Global diversity and biogeography of deep-sea pelagic prokaryotes

G Salazar, FM Cornejo-Castillo… - The ISME …, 2016 - academic.oup.com
The deep-sea is the largest biome of the biosphere, and contains more than half of the
whole ocean's microbes. Uncovering their general patterns of diversity and community …

Metagenomics reveals microbial diversity and metabolic potentials of seawater and surface sediment from a hadal biosphere at the Yap Trench

X Zhang, W Xu, Y Liu, M Cai, Z Luo, M Li - Frontiers in microbiology, 2018 - frontiersin.org
Hadal biosphere represents the deepest part of the ocean with water depth> 6,000 m.
Accumulating evidence suggests the existence of unique microbial communities dominated …

DiTing: a pipeline to infer and compare biogeochemical pathways from metagenomic and metatranscriptomic data

CX Xue, H Lin, XY Zhu, J Liu, Y Zhang… - Frontiers in …, 2021 - frontiersin.org
Metagenomics and metatranscriptomics are powerful methods to uncover key micro-
organisms and processes driving biogeochemical cycling in natural ecosystems. Databases …

Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype

JC Thrash, B Temperton, BK Swan, ZC Landry… - The ISME …, 2014 - academic.oup.com
Bacterioplankton of the SAR11 clade are the most abundant microorganisms in marine
systems, usually representing 25% or more of the total bacterial cells in seawater worldwide …

Evolution and ecology of CRISPR

ER Westra, AJ Dowling, JM Broniewski… - Annual Review of …, 2016 - annualreviews.org
CRISPR (clustered regularly interspaced short palindromic repeats)-Cas (CRISPR-
associated) systems are prokaryotic adaptive immune systems that provide protection …

Vertically distinct microbial communities in the Mariana and Kermadec trenches

LM Peoples, S Donaldson, O Osuntokun, Q **a… - Plos one, 2018 - journals.plos.org
Hadal trenches, oceanic locations deeper than 6,000 m, are thought to have distinct
microbial communities compared to those at shallower depths due to high hydrostatic …

[HTML][HTML] Marine metagenomics as a source for bioprospecting

R Kodzius, T Gojobori - Marine genomics, 2015 - Elsevier
This review summarizes usage of genome-editing technologies for metagenomic studies;
these studies are used to retrieve and modify valuable microorganisms for production …

Metagenomic insights into the microbial community and nutrient cycling in the western subarctic Pacific Ocean

Y Li, H **g, X **a, S Cheung, K Suzuki… - Frontiers in …, 2018 - frontiersin.org
The composition and metabolic functions of prokaryotic communities in the western
subarctic Pacific (WSP), where strong mixing of waters from the Sea of Okhotsk and the East …