Bipartite graphs in systems biology and medicine: a survey of methods and applications

GA Pavlopoulos, PI Kontou, A Pavlopoulou… - …, 2018 - academic.oup.com
The latest advances in high-throughput techniques during the past decade allowed the
systems biology field to expand significantly. Today, the focus of biologists has shifted from …

Exploration and visualization in the web of big linked data: A survey of the state of the art

N Bikakis, T Sellis - arxiv preprint arxiv:1601.08059, 2016 - arxiv.org
Data exploration and visualization systems are of great importance in the Big Data era.
Exploring and visualizing very large datasets has become a major research challenge, of …

Big data visualization tools

N Bikakis - arxiv preprint arxiv:1801.08336, 2018 - arxiv.org
Data visualization is the presentation of data in a pictorial or graphical format, and a data
visualization tool is the software that generates this presentation. Data visualization provides …

[書籍][B] Linked data visualization: techniques, tools, and big data

L Po, N Bikakis, F Desimoni, G Papastefanatos - 2020 - books.google.com
Linked Data (LD) is a well-established standard for publishing and managing structured
information on the Web, gathering and bridging together knowledge from different scientific …

Empirical comparison of visualization tools for larger‐scale network analysis

GA Pavlopoulos, D Paez-Espino… - Advances in …, 2017 - Wiley Online Library
Gene expression, signal transduction, protein/chemical interactions, biomedical literature
cooccurrences, and other concepts are often captured in biological network representations …

Empirical evaluation of linked data visualization tools

F Desimoni, L Po - Future Generation Computer Systems, 2020 - Elsevier
The economic impact of open data in Europe has an estimated value of€ 140 billions a year
between direct and indirect effects. The social impact is also known to be high, as the use of …

The genome sequence and transcriptome of Potentilla micrantha and their comparison to Fragaria vesca (the woodland strawberry)

M Buti, M Moretto, E Barghini, F Mascagni, L Natali… - …, 2018 - academic.oup.com
Abstract Background The genus Potentilla is closely related to that of Fragaria, the
economically important strawberry genus. Potentilla micrantha is a species that does not …

[HTML][HTML] Visualizing large knowledge graphs: A performance analysis

J Gómez-Romero, M Molina-Solana… - Future Generation …, 2018 - Elsevier
Abstract Knowledge graphs are an increasingly important source of data and context
information in Data Science. A first step in data analysis is data exploration, in which …

Tracing the footsteps of autophagy in computational biology

DT Sarmah, N Bairagi, S Chatterjee - Briefings in Bioinformatics, 2021 - academic.oup.com
Autophagy plays a crucial role in maintaining cellular homeostasis through the degradation
of unwanted materials like damaged mitochondria and misfolded proteins. However, the …

A hierarchical aggregation framework for efficient multilevel visual exploration and analysis

N Bikakis, G Papastefanatos, M Skourla… - Semantic …, 2016 - journals.sagepub.com
Data exploration and visualization systems are of great importance in the Big Data era, in
which the volume and heterogeneity of available information make it difficult for humans to …