Formative pluripotency: the executive phase in a developmental continuum

A Smith - Development, 2017 - journals.biologists.com
The regulative capability of single cells to give rise to all primary embryonic lineages is
termed pluripotency. Observations of fluctuating gene expression and phenotypic …

A double take on bivalent promoters

P Voigt, WW Tee, D Reinberg - Genes & development, 2013 - genesdev.cshlp.org
Histone modifications and chromatin-associated protein complexes are crucially involved in
the control of gene expression, supervising cell fate decisions and differentiation. Many …

Rolling back human pluripotent stem cells to an eight-cell embryo-like stage

MA Mazid, C Ward, Z Luo, C Liu, Y Li, Y Lai, L Wu, J Li… - Nature, 2022 - nature.com
After fertilization, the quiescent zygote experiences a burst of genome activation that initiates
a short-lived totipotent state. Understanding the process of totipotency in human cells would …

Capture of mouse and human stem cells with features of formative pluripotency

M Kinoshita, M Barber, W Mansfield, Y Cui, D Spindlow… - Cell stem cell, 2021 - cell.com
Pluripotent cells emerge as a naive founder population in the blastocyst, acquire capacity for
germline and soma formation, and then undergo lineage priming. Mouse embryonic stem …

[HTML][HTML] Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells

AM Klein, L Mazutis, I Akartuna, N Tallapragada… - Cell, 2015 - cell.com
It has long been the dream of biologists to map gene expression at the single-cell level. With
such data one might track heterogeneous cell sub-populations, and infer regulatory …

Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity

SA Smallwood, HJ Lee, C Angermueller, F Krueger… - Nature …, 2014 - nature.com
We report a single-cell bisulfite sequencing (scBS-seq) method that can be used to
accurately measure DNA methylation at up to 48.4% of CpG sites. Embryonic stem cells …

Single cell RNA-sequencing of pluripotent states unlocks modular transcriptional variation

AA Kolodziejczyk, JK Kim, JCH Tsang, T Ilicic… - Cell stem cell, 2015 - cell.com
Embryonic stem cell (ESC) culture conditions are important for maintaining long-term self-
renewal, and they influence cellular pluripotency state. Here, we report single cell RNA …

Chromatin modifiers and remodellers: regulators of cellular differentiation

T Chen, SYR Dent - Nature Reviews Genetics, 2014 - nature.com
Cellular differentiation is, by definition, epigenetic. Genome-wide profiling of pluripotent cells
and differentiated cells suggests global chromatin remodelling during differentiation, which …

Embryonic stem cell potency fluctuates with endogenous retrovirus activity

TS Macfarlan, WD Gifford, S Driscoll, K Lettieri… - Nature, 2012 - nature.com
Embryonic stem (ES) cells are derived from blastocyst-stage embryos and are thought to be
functionally equivalent to the inner cell mass, which lacks the ability to produce all …

[HTML][HTML] Reconstitution of the mouse germ cell specification pathway in culture by pluripotent stem cells

K Hayashi, H Ohta, K Kurimoto, S Aramaki, M Saitou - Cell, 2011 - cell.com
The generation of properly functioning gametes in vitro requires reconstitution of the
multistepped pathway of germ cell development. We demonstrate here the generation of …