Identification of tumor antigens with immunopeptidomics
C Chong, G Coukos, M Bassani-Sternberg - Nature Biotechnology, 2022 - nature.com
The identification of actionable tumor antigens is indispensable for the development of
several cancer immunotherapies, including T cell receptor–transduced T cells and patient …
several cancer immunotherapies, including T cell receptor–transduced T cells and patient …
Quantitative proteomic analysis of histone modifications
Several mechanisms have been proposed for histone marks to exert their functions,
including altering the physical properties of nucleosomes by neutralization of charge via …
including altering the physical properties of nucleosomes by neutralization of charge via …
Genomic insights into the Ixodes scapularis tick vector of Lyme disease
Ticks transmit more pathogens to humans and animals than any other arthropod. We
describe the 2.1 Gbp nuclear genome of the tick, Ixodes scapularis (Say), which vectors …
describe the 2.1 Gbp nuclear genome of the tick, Ixodes scapularis (Say), which vectors …
[HTML][HTML] ProLuCID: An improved SEQUEST-like algorithm with enhanced sensitivity and specificity
ProLuCID, a new algorithm for peptide identification using tandem mass spectrometry and
protein sequence databases has been developed. This algorithm uses a three tier scoring …
protein sequence databases has been developed. This algorithm uses a three tier scoring …
PEAKS DB: de novo sequencing assisted database search for sensitive and accurate peptide identification
J Zhang, L **n, B Shan, W Chen, M **e… - Molecular & cellular …, 2012 - mcponline.org
Many software tools have been developed for the automated identification of peptides from
tandem mass spectra. The accuracy and sensitivity of the identification software via …
tandem mass spectra. The accuracy and sensitivity of the identification software via …
OpenMS–an open-source software framework for mass spectrometry
M Sturm, A Bertsch, C Gröpl, A Hildebrandt… - BMC …, 2008 - Springer
Background Mass spectrometry is an essential analytical technique for high-throughput
analysis in proteomics and metabolomics. The development of new separation techniques …
analysis in proteomics and metabolomics. The development of new separation techniques …
The Paragon Algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass …
The Paragon™ Algorithm, a novel database search engine for the identification of peptides
from tandem mass spectrometry data, is presented. Sequence Temperature Values are …
from tandem mass spectrometry data, is presented. Sequence Temperature Values are …
A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics
AI Nesvizhskii - Journal of proteomics, 2010 - Elsevier
This manuscript provides a comprehensive review of the peptide and protein identification
process using tandem mass spectrometry (MS/MS) data generated in shotgun proteomic …
process using tandem mass spectrometry (MS/MS) data generated in shotgun proteomic …
Repeatability and reproducibility in proteomic identifications by liquid chromatography− tandem mass spectrometry
The complexity of proteomic instrumentation for LC-MS/MS introduces many possible
sources of variability. Data-dependent sampling of peptides constitutes a stochastic element …
sources of variability. Data-dependent sampling of peptides constitutes a stochastic element …
Advances in structure elucidation of small molecules using mass spectrometry
The structural elucidation of small molecules using mass spectrometry plays an important
role in modern life sciences and bioanalytical approaches. This review covers different soft …
role in modern life sciences and bioanalytical approaches. This review covers different soft …