Metabolomics in systems biology

W Weckwerth - Annual review of plant biology, 2003 - annualreviews.org
The primary aim of “omic” technologies is the nontargeted identification of all gene products
(transcripts, proteins, and metabolites) present in a specific biological sample. By their …

Engineered gene circuits

J Hasty, D McMillen, JJ Collins - Nature, 2002 - nature.com
A central focus of postgenomic research will be to understand how cellular phenomena
arise from the connectivity of genes and proteins. This connectivity generates molecular …

[หนังสือ][B] Stochastic processes in cell biology

PC Bressloff - 2014 - Springer
One of the major challenges in modern biology is to understand how the molecular
components of a living cell operate in a highly noisy environment. What are the specific …

Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations

TB Kepler, TC Elston - Biophysical journal, 2001 - cell.com
Transcriptional regulation is an inherently noisy process. The origins of this stochastic
behavior can be traced to the random transitions among the discrete chemical states of …

A glucose meter interface for point-of-care gene circuit-based diagnostics

E Amalfitano, M Karlikow, M Norouzi, K Jaenes… - Nature …, 2021 - nature.com
Recent advances in cell-free synthetic biology have given rise to gene circuit-based sensors
with the potential to provide decentralized and low-cost molecular diagnostics. However, it …

Spatiotemporal control of gene expression with pulse-generating networks

S Basu, R Mehreja, S Thiberge, MT Chen… - Proceedings of the …, 2004 - pnas.org
One of the important challenges in the emerging field of synthetic biology is designing
artificial networks that achieve coordinated behavior in cell communities. Here we present a …

Computational studies of gene regulatory networks: in numero molecular biology

J Hasty, D McMillen, F Isaacs, JJ Collins - Nature Reviews Genetics, 2001 - nature.com
Remarkable progress in genomic research is leading to a complete map of the building
blocks of biology. Knowledge of this map is, in turn, setting the stage for a fundamental …

Identifying sigma70 promoters with novel pseudo nucleotide composition

H Lin, ZY Liang, H Tang, W Chen - IEEE/ACM transactions on …, 2017 - ieeexplore.ieee.org
Promoters are DNA regulatory elements located directly upstream or at the 5'end of the
transcription initiation site (TSS), which are in charge of gene transcription initiation. With the …

Synthetic in vitro transcriptional oscillators

J Kim, E Winfree - Molecular systems biology, 2011 - embopress.org
The construction of synthetic biochemical circuits from simple components illuminates how
complex behaviors can arise in chemistry and builds a foundation for future biological …

Prediction and measurement of an autoregulatory genetic module

FJ Isaacs, J Hasty, CR Cantor, JJ Collins - Proceedings of the National …, 2003 - pnas.org
The deduction of phenotypic cellular responses from the structure and behavior of complex
gene regulatory networks is one of the defining challenges of systems biology. This goal will …