Unraveling the thousand word picture: an introduction to super-resolution data analysis

A Lee, K Tsekouras, C Calderon, C Bustamante… - Chemical …, 2017 - ACS Publications
Super-resolution microscopy provides direct insight into fundamental biological processes
occurring at length scales smaller than light's diffraction limit. The analysis of data at such …

From “cellular” RNA to “smart” RNA: multiple roles of RNA in genome stability and beyond

F Michelini, AP Jalihal, S Francia, C Meers… - Chemical …, 2018 - ACS Publications
Coding for proteins has been considered the main function of RNA since the “central
dogma” of biology was proposed. The discovery of noncoding transcripts shed light on …

Live cell imaging of single RNA molecules with fluorogenic Mango II arrays

AD Cawte, PJ Unrau, DS Rueda - Nature communications, 2020 - nature.com
RNA molecules play vital roles in many cellular processes. Visualising their dynamics in live
cells at single-molecule resolution is essential to elucidate their role in RNA metabolism …

Simultaneous, single-particle measurements of size and loading give insights into the structure of drug-delivery nanoparticles

A Kamanzi, Y Gu, R Tahvildari, Z Friedenberger… - ACS …, 2021 - ACS Publications
Nanoparticles are a promising solution for delivery of a wide range of medicines and
vaccines. Optimizing their design depends on being able to resolve, understand, and predict …

Automated stoichiometry analysis of single-molecule fluorescence imaging traces via deep learning

J Xu, G Qin, F Luo, L Wang, R Zhao, N Li… - Journal of the …, 2019 - ACS Publications
The stoichiometry of protein complexes is precisely regulated in cells and is fundamental to
protein function. Singe-molecule fluorescence imaging based photobleaching event …

AutoStepfinder: A fast and automated step detection method for single-molecule analysis

L Loeff, JWJ Kerssemakers, C Joo, C Dekker - Patterns, 2021 - cell.com
Single-molecule techniques allow the visualization of the molecular dynamics of nucleic
acids and proteins with high spatiotemporal resolution. Valuable kinetic information of …

An alternative framework for fluorescence correlation spectroscopy

S Jazani, I Sgouralis, OM Shafraz, S Sivasankar… - Biophysical …, 2019 - cell.com
Fluorescence correlation spectroscopy (FCS) is a flexible and widely used tool routinely
exploited in vivo. While FCS provides estimates of dynamical quantities, such as diffusion …

Selective recognition of the amyloid marker single thioflavin T using DNA origami-based gold nanobipyramid nanoantennas

C Kaur, V Kaur, S Rai, M Sharma, T Sen - Nanoscale, 2023 - pubs.rsc.org
The development of effective methods for the detection of protein misfolding is highly
beneficial for early stage medical diagnosis and the prevention of many neurodegenerative …

Fluorescence Microscopy: a statistics-optics perspective

M Fazel, KS Grussmayer, B Ferdman, A Radenovic… - Reviews of Modern …, 2024 - APS
Fundamental properties of light unavoidably impose features on images collected using
fluorescence microscopes. Accounting for these features is often critical in quantitatively …

Photobleaching step analysis for robust determination of protein complex stoichiometries

J Hummert, K Yserentant, T Fink… - Molecular biology of …, 2021 - Am Soc Cell Biol
The counting of discrete photobleaching steps in fluorescence microscopy is ideally suited
to study protein complex stoichiometry in situ. The counting range of photobleaching step …