Verrucomicrobia use hundreds of enzymes to digest the algal polysaccharide fucoidan

A Sichert, CH Corzett, MS Schechter, F Unfried… - Nature …, 2020 - nature.com
Brown algae are important players in the global carbon cycle by fixing carbon dioxide into 1
Gt of biomass annually, yet the fate of fucoidan—their major cell wall polysaccharide …

Essential genes in Bacillus subtilis: a re-evaluation after ten years

FM Commichau, N Pietack, J Stülke - Molecular BioSystems, 2013 - pubs.rsc.org
In 2003, an initial study on essential genes in the Gram-positive model bacterium described
271 genes as essential. In the past decade, the functions of many unknown genes and their …

Impact of dietary resistant starch on the human gut microbiome, metaproteome, and metabolome

TV Maier, M Lucio, LH Lee, NC VerBerkmoes… - MBio, 2017 - journals.asm.org
Diet can influence the composition of the human microbiome, and yet relatively few dietary
ingredients have been systematically investigated with respect to their impact on the …

Exoproteomics: exploring the world around biological systems

J Armengaud, JA Christie-Oleza, G Clair… - Expert Review of …, 2012 - Taylor & Francis
The term 'exoproteome'describes the protein content that can be found in the extracellular
proximity of a given biological system. These proteins arise from cellular secretion, other …

Visual account of protein investment in cellular functions

W Liebermeister, E Noor, A Flamholz, D Davidi… - Proceedings of the …, 2014 - pnas.org
Proteomics techniques generate an avalanche of data and promise to satisfy biologists' long-
held desire to measure absolute protein abundances on a genome-wide scale. However …

Spatial sorting enables comprehensive characterization of liver zonation

S Ben-Moshe, Y Shapira, AE Moor, R Manco, T Veg… - Nature …, 2019 - nature.com
The mammalian liver is composed of repeating hexagonal units termed lobules. Spatially
resolved single-cell transcriptomics has revealed that about half of hepatocyte genes are …

Small cationic antimicrobial peptides delocalize peripheral membrane proteins

M Wenzel, AI Chiriac, A Otto, D Zweytick, C May… - Proceedings of the …, 2014 - pnas.org
Short antimicrobial peptides rich in arginine (R) and tryptophan (W) interact with
membranes. To learn how this interaction leads to bacterial death, we characterized the …

Bacillus subtilis: from soil bacterium to super-secreting cell factory

JM van Dijl, M Hecker - Microbial cell factories, 2013 - Springer
The biotechnology industry has become a key element in modern societies. Within this
industry, the production of recombinant enzymes and biopharmaceutical proteins is of major …

A marine bacterial enzymatic cascade degrades the algal polysaccharide ulvan

L Reisky, A Prechoux, MK Zühlke, M Bäumgen… - Nature chemical …, 2019 - nature.com
Marine seaweeds increasingly grow into extensive algal blooms, which are detrimental to
coastal ecosystems, tourism and aquaculture. However, algal biomass is also emerging as a …

Functional characterization of polysaccharide utilization loci in the marine Bacteroidetes 'Gramella forsetii' KT0803

A Kabisch, A Otto, S König, D Becher… - The ISME …, 2014 - academic.oup.com
Members of the phylum Bacteroidetes are abundant in many marine ecosystems and are
known to have a pivotal role in the mineralization of complex organic substrates such as …