Algorithmic graph theory, reinforcement learning and game theory in MD simulations: From 3D structures to topological 2D-molecular graphs (2D-MolGraphs) and vice …

S Bougueroua, M Bricage, Y Aboulfath, D Barth… - Molecules, 2023 - mdpi.com
This paper reviews graph-theory-based methods that were recently developed in our group
for post-processing molecular dynamics trajectories. We show that the use of algorithmic …

Time-resolved graphs of polymorphic cycles for h-bonded network identification in flexible biomolecules

Y Aboulfath, S Bougueroua, A Cimas… - Journal of Chemical …, 2024 - ACS Publications
A novel approach based on a coarse-grained representation of topological graphs is
proposed for the automatic analysis of molecular dynamics (MD) trajectories of hydrogen …

Algorithmes de graphes pour l'analyse des conformations de dynamique moléculaire

Y Aboulfath - 2024 - theses.hal.science
La thèse présente une nouvelle méthode pour l'analyse et la comparaison de trajectoires de
dynamique moléculaire basée sur l'algorithmique de graphes. Nous considérons une …

Algorithmic graph theory, reinforcement learning and game theory in MD simulations: from 3D-structures to topological 2D-MolGraphs and backwards

S Bougueroua, M Bricage, Y Aboulfath, D Barth… - 2022 - chemrxiv.org
This paper reviews graph theory-based methods that were recently developed in our group
for post-processing molecular dynamics trajectories. We show that the use of algorithmic …