UniProt: a hub for protein information
UniProt Consortium - Nucleic acids research, 2015 - academic.oup.com
UniProt is an important collection of protein sequences and their annotations, which has
doubled in size to 80 million sequences during the past year. This growth in sequences has …
doubled in size to 80 million sequences during the past year. This growth in sequences has …
Nontargeted in vitro metabolomics for high-throughput identification of novel enzymes in Escherichia coli
Our understanding of metabolism is limited by a lack of knowledge about the functions of
many enzymes. Here, we develop a high-throughput mass spectrometry approach to …
many enzymes. Here, we develop a high-throughput mass spectrometry approach to …
A computational workflow for the expansion of heterologous biosynthetic pathways to natural product derivatives
Plant natural products (PNPs) and their derivatives are important but underexplored sources
of pharmaceutical molecules. To access this untapped potential, the reconstitution of …
of pharmaceutical molecules. To access this untapped potential, the reconstitution of …
Profiling the orphan enzymes
Abstract The emergence of Next Generation Sequencing generates an incredible amount of
sequence and great potential for new enzyme discovery. Despite this huge amount of data …
sequence and great potential for new enzyme discovery. Despite this huge amount of data …
Enzyme annotation for orphan and novel reactions using knowledge of substrate reactive sites
Thousands of biochemical reactions with characterized activities are “orphan,” meaning they
cannot be assigned to a specific enzyme, leaving gaps in metabolic pathways. Novel …
cannot be assigned to a specific enzyme, leaving gaps in metabolic pathways. Novel …
Metabolic assessment of E. coli as a Biofactory for commercial products
X Zhang, CJ Tervo, JL Reed - Metabolic engineering, 2016 - Elsevier
Metabolic engineering uses microorganisms to synthesize chemicals from renewable
resources. Given the thousands of known metabolites, it is unclear what valuable chemicals …
resources. Given the thousands of known metabolites, it is unclear what valuable chemicals …
Updates in Rhea—a manually curated resource of biochemical reactions
A Morgat, KB Axelsen, T Lombardot… - Nucleic acids …, 2015 - academic.oup.com
Abstract Rhea (http://www. ebi. ac. uk/rhea) is a comprehensive and non-redundant
resource of expert-curated biochemical reactions described using species from the ChEBI …
resource of expert-curated biochemical reactions described using species from the ChEBI …
Exploring biochemical pathways for mono-ethylene glycol (MEG) synthesis from synthesis gas
Mono-ethylene glycol (MEG) is an important petrochemical with widespread use in
numerous consumer products. The current industrial MEG-production process relies on non …
numerous consumer products. The current industrial MEG-production process relies on non …
Mesaconase activity of class I fumarase contributes to mesaconate utilization by Burkholderia xenovorans
Pseudomonas aeruginosa, Yersinia pestis, and many other bacteria are able to utilize the
C5-dicarboxylic acid itaconate (methylenesuccinate). Itaconate degradation starts with its …
C5-dicarboxylic acid itaconate (methylenesuccinate). Itaconate degradation starts with its …
Global untargeted serum metabolomic analyses nominate metabolic pathways responsive to loss of expression of the orphan metallo β-lactamase, MBLAC1
CL Gibson, SG Codreanu, AC Schrimpe-Rutledge… - Molecular omics, 2018 - pubs.rsc.org
The C. elegans gene swip-10 encodes an orphan metallo β-lactamase that genetic studies
indicate is vital for limiting neuronal excitability and viability. Sequence analysis indicates …
indicate is vital for limiting neuronal excitability and viability. Sequence analysis indicates …