sdmTMB: an R package for fast, flexible, and user-friendly generalized linear mixed effects models with spatial and spatiotemporal random fields

SC Anderson, EJ Ward, PA English, LAK Barnett - BioRxiv, 2022 - biorxiv.org
Geostatistical data—spatially referenced observations related to some continuous spatial
phenomenon—are ubiquitous in ecology and can reveal ecological processes and inform …

Addressing uncertainty when projecting marine species' distributions under climate change

SC Davies, PL Thompson, C Gomez, J Nephin… - …, 2023 - Wiley Online Library
Species distribution models (SDMs) have been widely used to project terrestrial species'
responses to climate change and are increasingly being used for similar objectives in the …

Catch per unit effort modelling for stock assessment: A summary of good practices

SD Hoyle, RA Campbell, ND Ducharme-Barth… - Fisheries …, 2024 - Elsevier
Indices of abundance based on fishery catch-per-unit-effort (CPUE) are important
components of many stock assessments, particularly when fishery-independent surveys are …

Projecting species distributions using fishery‐dependent data

MA Karp, S Brodie, JA Smith, K Richerson… - Fish and …, 2023 - Wiley Online Library
Many marine species are shifting their distributions in response to changing ocean
conditions, posing significant challenges and risks for fisheries management. Species …

Combining scientific survey and commercial catch data to map fish distribution

B Alglave, E Rivot, MP Etienne… - ICES Journal of …, 2022 - academic.oup.com
Abstract Develo** Species Distribution Models (SDM) for marine exploited species is a
major challenge in fisheries ecology. Classical modelling approaches typically rely on fish …

Impacts of fisheries-dependent spatial sampling patterns on catch-per-unit-effort standardization: a simulation study and fishery application

ND Ducharme-Barth, A Grüss, MT Vincent, H Kiyofuji… - Fisheries …, 2022 - Elsevier
Abundance indices derived from fisheries-dependent data (catch-per-unit-effort or CPUE)
are known to have potential for bias, in part because of the usual non-random nature of …

Combining fishery data through integrated species distribution models

I Paradinas, JB Illian… - ICES Journal of …, 2023 - academic.oup.com
Abstract Species Distribution Models are pivotal for fisheries management. There has been
an increasing number of fishery data sources available, making data integration an attractive …

Integrating survey and observer data improves the predictions of New Zealand spatio-temporal models

A Grüss, AR Charsley, JT Thorson… - ICES Journal of …, 2023 - academic.oup.com
In many situations, species distribution models need to make use of multiple data sources to
address their objectives. We developed a spatio-temporal modelling framework that …

The shadow model: how and why small choices in spatially explicit species distribution models affect predictions

CJC Commander, LAK Barnett, EJ Ward, SC Anderson… - PeerJ, 2022 - peerj.com
The use of species distribution models (SDMs) has rapidly increased over the last decade,
driven largely by increasing observational evidence of distributional shifts of terrestrial and …

The rapid expansion of offshore wind farms challenges the reliability of ICES-coordinated fish surveys—insights from the Baltic Sea

S Haase, C von Dorrien, O Kaljuste… - ICES Journal of …, 2023 - academic.oup.com
Fish stock assessment and sustainable management requires that the whole distribution
area of the managed fish stocks is representatively sampled. Along with an increasing …