Metagenomics and future perspectives in virus discovery

JL Mokili, F Rohwer, BE Dutilh - Current opinion in virology, 2012 - Elsevier
Monitoring the emergence and re-emergence of viral diseases with the goal of containing
the spread of viral agents requires both adequate preparedness and quick response …

Expanding the RNA virosphere by unbiased metagenomics

YZ Zhang, YM Chen, W Wang, XC Qin… - Annual Review of …, 2019 - annualreviews.org
Although viruses comprise the most abundant genetic material in the biosphere, to date only
several thousand virus species have been formally defined. Such a limited perspective on …

Viral Metagenomics Revealed Sendai Virus and Coronavirus Infection of Malayan Pangolins (Manis javanica)

P Liu, W Chen, JP Chen - Viruses, 2019 - mdpi.com
Pangolins are endangered animals in urgent need of protection. Identifying and cataloguing
the viruses carried by pangolins is a logical approach to evaluate the range of potential …

Application of next-generation sequencing technologies in virology

AD Radford, D Chapman, L Dixon… - Journal of general …, 2012 - microbiologyresearch.org
The progress of science is punctuated by the advent of revolutionary technologies that
provide new ways and scales to formulate scientific questions and advance knowledge …

The fecal viral flora of wild rodents

TG Phan, B Kapusinszky, C Wang, RK Rose… - PLoS …, 2011 - journals.plos.org
The frequent interactions of rodents with humans make them a common source of zoonotic
infections. To obtain an initial unbiased measure of the viral diversity in the enteric tract of …

PRICE: software for the targeted assembly of components of (Meta) genomic sequence data

JG Ruby, P Bellare, JL DeRisi - G3: Genes, Genomes, Genetics, 2013 - academic.oup.com
Low-cost DNA sequencing technologies have expanded the role for direct nucleic acid
sequencing in the analysis of genomes, transcriptomes, and the metagenomes of whole …

Applications of next-generation sequencing technologies to diagnostic virology

L Barzon, E Lavezzo, V Militello, S Toppo… - International journal of …, 2011 - mdpi.com
Novel DNA sequencing techniques, referred to as “next-generation” sequencing (NGS),
provide high speed and throughput that can produce an enormous volume of sequences …

[HTML][HTML] Viral pathogen discovery

CY Chiu - Current opinion in microbiology, 2013 - Elsevier
Highlights•Pathogen discovery is critically important to infectious diseases and public
health.•Nearly all new outbreaks are caused by the emergence of novel viruses.•Genomic …

[HTML][HTML] A decade of RNA virus metagenomics is (not) enough

AL Greninger - Virus research, 2018 - Elsevier
It is hard to overemphasize the role that metagenomics has had on our recent understanding
of RNA virus diversity. Metagenomics in the 21st century has brought with it an explosion in …

Elevated levels of circulating DNA in cardiovascular disease patients: metagenomic profiling of microbiome in the circulation

V Dinakaran, A Rathinavel, M Pushpanathan… - PloS one, 2014 - journals.plos.org
Cardiovascular diseases (CVDs) are the leading cause of death worldwide. An expanding
body of evidence supports the role of human microbiome in the establishment of CVDs and …