Single-cell sequencing of brain cell transcriptomes and epigenomes
Single-cell sequencing technologies, including transcriptomic and epigenomic assays, are
transforming our understanding of the cellular building blocks of neural circuits. By directly …
transforming our understanding of the cellular building blocks of neural circuits. By directly …
Diversity and dynamism in the cerebellum
The past several years have brought revelations and paradigm shifts in research on the
cerebellum. Historically viewed as a simple sensorimotor controller with homogeneous …
cerebellum. Historically viewed as a simple sensorimotor controller with homogeneous …
A multimodal cell census and atlas of the mammalian primary motor cortex
Principal manuscript editors, Analysis coordination… - Nature, 2021 - nature.com
Here we report the generation of a multimodal cell census and atlas of the mammalian
primary motor cortex as the initial product of the BRAIN Initiative Cell Census Network …
primary motor cortex as the initial product of the BRAIN Initiative Cell Census Network …
The spatial and cell-type distribution of SARS-CoV-2 receptor ACE2 in the human and mouse brains
By engaging angiotensin-converting enzyme 2 (ACE2 or Ace2), the novel pathogenic
severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) invades host cells and …
severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) invades host cells and …
Robust decomposition of cell type mixtures in spatial transcriptomics
A limitation of spatial transcriptomics technologies is that individual measurements may
contain contributions from multiple cells, hindering the discovery of cell-type-specific spatial …
contain contributions from multiple cells, hindering the discovery of cell-type-specific spatial …
Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram
Charting an organs' biological atlas requires us to spatially resolve the entire single-cell
transcriptome, and to relate such cellular features to the anatomical scale. Single-cell and …
transcriptome, and to relate such cellular features to the anatomical scale. Single-cell and …
SPARK-X: non-parametric modeling enables scalable and robust detection of spatial expression patterns for large spatial transcriptomic studies
Spatial transcriptomic studies are becoming increasingly common and large, posing
important statistical and computational challenges for many analytic tasks. Here, we present …
important statistical and computational challenges for many analytic tasks. Here, we present …
Cerebellar nuclei evolved by repeatedly duplicating a conserved cell-type set
INTRODUCTION The brains of extant animals have evolved over hundreds of millions of
years from simple circuits. Cell types diversified, connections elaborated, and new brain …
years from simple circuits. Cell types diversified, connections elaborated, and new brain …
STRIDE: accurately decomposing and integrating spatial transcriptomics using single-cell RNA sequencing
The recent advances in spatial transcriptomics have brought unprecedented opportunities to
understand the cellular heterogeneity in the spatial context. However, the current limitations …
understand the cellular heterogeneity in the spatial context. However, the current limitations …
The cerebellar cortex
The cerebellar cortex is an important system for relating neural circuits and learning. Its
promise reflects the longstanding idea that it contains simple, repeated circuit modules with …
promise reflects the longstanding idea that it contains simple, repeated circuit modules with …