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The HADDOCK2. 4 web server for integrative modeling of biomolecular complexes
Interactions between macromolecules, such as proteins and nucleic acids, are essential for
cellular functions. Experimental methods can fail to provide all the information required to …
cellular functions. Experimental methods can fail to provide all the information required to …
Development and use of machine learning algorithms in vaccine target selection
B Bravi - npj Vaccines, 2024 - nature.com
Computer-aided discovery of vaccine targets has become a cornerstone of rational vaccine
design. In this article, I discuss how Machine Learning (ML) can inform and guide key …
design. In this article, I discuss how Machine Learning (ML) can inform and guide key …
ImmuneBuilder: Deep-Learning models for predicting the structures of immune proteins
Immune receptor proteins play a key role in the immune system and have shown great
promise as biotherapeutics. The structure of these proteins is critical for understanding their …
promise as biotherapeutics. The structure of these proteins is critical for understanding their …
[HTML][HTML] Advances in computational structure-based antibody design
Antibodies are currently the most important class of biotherapeutics and are used to treat
numerous diseases. Recent advances in computational methods are ushering in a new era …
numerous diseases. Recent advances in computational methods are ushering in a new era …
Progress and challenges for the machine learning-based design of fit-for-purpose monoclonal antibodies
Although the therapeutic efficacy and commercial success of monoclonal antibodies (mAbs)
are tremendous, the design and discovery of new candidates remain a time and cost …
are tremendous, the design and discovery of new candidates remain a time and cost …
Machine-designed biotherapeutics: opportunities, feasibility and advantages of deep learning in computational antibody discovery
W Wilman, S Wróbel, W Bielska… - Briefings in …, 2022 - academic.oup.com
Antibodies are versatile molecular binders with an established and growing role as
therapeutics. Computational approaches to develo** and designing these molecules are …
therapeutics. Computational approaches to develo** and designing these molecules are …
Computational approaches to therapeutic antibody design: established methods and emerging trends
Antibodies are proteins that recognize the molecular surfaces of potentially noxious
molecules to mount an adaptive immune response or, in the case of autoimmune diseases …
molecules to mount an adaptive immune response or, in the case of autoimmune diseases …
An expanded benchmark for antibody-antigen docking and affinity prediction reveals insights into antibody recognition determinants
Accurate predictive modeling of antibody-antigen complex structures and structure-based
antibody design remain major challenges in computational biology, with implications for …
antibody design remain major challenges in computational biology, with implications for …
Computational methods in immunology and vaccinology: design and development of antibodies and immunogens
The design of new biomolecules able to harness immune mechanisms for the treatment of
diseases is a prime challenge for computational and simulative approaches. For instance, in …
diseases is a prime challenge for computational and simulative approaches. For instance, in …
[HTML][HTML] Affinity maturation of antibody fragments: A review encompassing the development from random approaches to computational rational optimization
J Li, G Kang, J Wang, H Yuan, Y Wu, S Meng… - International journal of …, 2023 - Elsevier
Routinely screened antibody fragments usually require further in vitro maturation to achieve
the desired biophysical properties. Blind in vitro strategies can produce improved ligands by …
the desired biophysical properties. Blind in vitro strategies can produce improved ligands by …