A survey of high level frameworks in block-structured adaptive mesh refinement packages

A Dubey, A Almgren, J Bell, M Berzins, S Brandt… - Journal of Parallel and …, 2014 - Elsevier
Over the last decade block-structured adaptive mesh refinement (SAMR) has found
increasing use in large, publicly available codes and frameworks. SAMR frameworks have …

[PDF][PDF] Real-time motion tracking using optical flow on multiple GPUs

SA Mahmoudi, M Kierzynka… - Bulletin of the Polish …, 2014 - bibliotekanauki.pl
Motion tracking algorithms are widely used in computer vision related research. However,
the new video standards, especially those in high resolutions, cause that current …

[BOOK][B] Software engineering for science

JC Carver, NPC Hong, GK Thiruvathukal - 2016 - books.google.com
Software Engineering for Science provides an in-depth collection of peer-reviewed chapters
that describe experiences with applying software engineering practices to the development …

Graph algorithms for DNA sequencing–origins, current models and the future

J Blazewicz, M Kasprzak, M Kierzynka… - European Journal of …, 2018 - Elsevier
With the ubiquitous presence of next-generation sequencing in modern biological, genetic,
pharmaceutical and medical research, not everyone pays attention to the underlying …

The dividends of investing in computational software design: A case study

A Dubey, P Tzeferacos… - The International Journal …, 2019 - journals.sagepub.com
A significant fraction of computational software for scientific research grows through
accretion. In a common scenario, a small group develops a code for a specific purpose …

Understanding the landscape of scientific software used on high-performance computing platforms

A Grannan, K Sood, B Norris… - … International Journal of …, 2020 - journals.sagepub.com
Scientific discovery increasingly relies on computation through simulations, analytics, and
machine and deep learning. Of these, simulations on high-performance computing (HPC) …

Energy and performance improvements in stencil computations on multi-node HPC systems with different network and communication topologies

M Ciżnicki, K Kurowski, J Wȩglarz - Future Generation Computer Systems, 2021 - Elsevier
Energy and performance improvements in stencil computations are relevant for both
application developers and data center administrators. They appear as the fundamental …

HydroShare–A Case Study of the Application of Modern Software Engineering to a Large Distributed Federally-Funded Scientific Software Development Project

R Idaszak, DG Tarboton, H Yi… - Software Engineering …, 2016 - taylorfrancis.com
Ray Idaszak, David G. Tarboton (Principal Investigator), Hong Yi, Laura Christopherson,
Michael J. Stealey, Brian Miles, Pabitra Dash, Alva Couch, Calvin Spealman, Jeffery S …

Cactus: Issues for sustainable simulation software

F Löffler, SR Brandt, G Allen, E Schnetter - arxiv preprint arxiv:1309.1812, 2013 - arxiv.org
The Cactus Framework is an open-source, modular, portable programming environment for
the collaborative development and deployment of scientific applications using high …

Energy aware scheduling model and online heuristics for stencil codes on heterogeneous computing architectures

M Ciznicki, K Kurowski, J Weglarz - Cluster Computing, 2017 - Springer
Performance of high-end supercomputers will reach the exascale through the advent of core
counts in billions. However, in the upcoming exascale computing era it is important not only …