Aptamer–protein interactions: from regulation to biomolecular detection
C Ji, J Wei, L Zhang, X Hou, J Tan, Q Yuan… - Chemical …, 2023 - ACS Publications
Serving as the basis of cell life, interactions between nucleic acids and proteins play
essential roles in fundamental cellular processes. Aptamers are unique single-stranded …
essential roles in fundamental cellular processes. Aptamers are unique single-stranded …
Computational tools for aptamer identification and optimization
D Sun, M Sun, J Zhang, X Lin, Y Zhang, F Lin… - TrAC Trends in …, 2022 - Elsevier
Aptamers are single-stranded DNA or RNA oligonucleotides that can selectively bind to a
specific target. They are generally obtained by SELEX, but the procedure is challenging and …
specific target. They are generally obtained by SELEX, but the procedure is challenging and …
Accurate prediction of protein–nucleic acid complexes using RoseTTAFoldNA
Protein–RNA and protein–DNA complexes play critical roles in biology. Despite
considerable recent advances in protein structure prediction, the prediction of the structures …
considerable recent advances in protein structure prediction, the prediction of the structures …
The HDOCK server for integrated protein–protein docking
Abstract The HDOCK server (http://hdock. phys. hust. edu. cn/) is a highly integrated suite of
homology search, template-based modeling, structure prediction, macromolecular docking …
homology search, template-based modeling, structure prediction, macromolecular docking …
HDOCK: a web server for protein–protein and protein–DNA/RNA docking based on a hybrid strategy
Protein–protein and protein–DNA/RNA interactions play a fundamental role in a variety of
biological processes. Determining the complex structures of these interactions is valuable, in …
biological processes. Determining the complex structures of these interactions is valuable, in …
Delicate structural coordination of the Severe Acute Respiratory Syndrome coronavirus Nsp13 upon ATP hydrolysis
Z Jia, L Yan, Z Ren, L Wu, J Wang, J Guo… - Nucleic acids …, 2019 - academic.oup.com
To date, an effective therapeutic treatment that confers strong attenuation toward
coronaviruses (CoVs) remains elusive. Of all the potential drug targets, the helicase of CoVs …
coronaviruses (CoVs) remains elusive. Of all the potential drug targets, the helicase of CoVs …
Induction of tumor apoptosis through a circular RNA enhancing Foxo3 activity
Circular RNAs are a class of non-coding RNAs that are receiving extensive attention.
Despite reports showing circular RNAs acting as microRNA sponges, the biological …
Despite reports showing circular RNAs acting as microRNA sponges, the biological …
A circular RNA circ-DNMT1 enhances breast cancer progression by activating autophagy
WW Du, W Yang, X Li, FM Awan, Z Yang, L Fang, J Lyu… - Oncogene, 2018 - nature.com
Circular RNAs are a large group of noncoding RNAs that are widely expressed in
mammalian cells. Genome-wide analyses have revealed abundant and evolutionarily …
mammalian cells. Genome-wide analyses have revealed abundant and evolutionarily …
Nuclear genome-derived circular RNA circPUM1 localizes in mitochondria and regulates oxidative phosphorylation in esophageal squamous cell carcinoma
W Gong, J Xu, Y Wang, Q Min, X Chen… - … and Targeted Therapy, 2022 - nature.com
Circular RNAs (circRNAs) were shown to play an important role in the occurrence and
progression of tumors. However, the functions of nuclear genome-derived circRNAs …
progression of tumors. However, the functions of nuclear genome-derived circRNAs …
RNA-Puzzles Round V: blind predictions of 23 RNA structures
RNA-Puzzles is a collective endeavor dedicated to the advancement and improvement of
RNA three-dimensional structure prediction. With agreement from structural biologists, RNA …
RNA three-dimensional structure prediction. With agreement from structural biologists, RNA …