Accurate and complete genomes from metagenomes
Genomes are an integral component of the biological information about an organism; thus,
the more complete the genome, the more informative it is. Historically, bacterial and …
the more complete the genome, the more informative it is. Historically, bacterial and …
Molluscan mitochondrial genomes break the rules
The first animal mitochondrial genomes to be sequenced were of several vertebrates and
model organisms, and the consistency of genomic features found has led to a 'textbook …
model organisms, and the consistency of genomic features found has led to a 'textbook …
[LIVRE][B] tRNAscan-SE: searching for tRNA genes in genomic sequences
Transfer RNAs are the largest, most complex non-coding RNA family, universal to all living
organisms. tRNAscan-SE has been the de facto tool for predicting tRNA genes in whole …
organisms. tRNAscan-SE has been the de facto tool for predicting tRNA genes in whole …
tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes
Abstract tRNAscan-SE has been widely used for transfer RNA (tRNA) gene prediction for
over twenty years, developed just as the first genomes were decoded. With the massive …
over twenty years, developed just as the first genomes were decoded. With the massive …
CPGAVAS2, an integrated plastome sequence annotator and analyzer
L Shi, H Chen, M Jiang, L Wang, X Wu… - Nucleic acids …, 2019 - academic.oup.com
We previously developed a web server CPGAVAS for annotation, visualization and
GenBank submission of plastome sequences. Here, we upgrade the server into CPGAVAS2 …
GenBank submission of plastome sequences. Here, we upgrade the server into CPGAVAS2 …
A human gut bacterial genome and culture collection for improved metagenomic analyses
Understanding gut microbiome functions requires cultivated bacteria for experimental
validation and reference bacterial genome sequences to interpret metagenome datasets …
validation and reference bacterial genome sequences to interpret metagenome datasets …
High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development
Using the latest sequencing and optical map** technologies, we have produced a high-
quality de novo assembly of the apple (Malus domestica Borkh.) genome. Repeat …
quality de novo assembly of the apple (Malus domestica Borkh.) genome. Repeat …
Genomes of subaerial Zygnematophyceae provide insights into land plant evolution
The transition to a terrestrial environment, termed terrestrialization, is generally regarded as
a pivotal event in the evolution and diversification of the land plant flora that changed the …
a pivotal event in the evolution and diversification of the land plant flora that changed the …
High-resolution quantitative profiling of tRNA abundance and modification status in eukaryotes by mim-tRNAseq
Measurements of cellular tRNA abundance are hampered by pervasive blocks to cDNA
synthesis at modified nucleosides and the extensive similarity among tRNA genes. We …
synthesis at modified nucleosides and the extensive similarity among tRNA genes. We …
TDP-43 aggregation induced by oxidative stress causes global mitochondrial imbalance in ALS
Amyotrophic lateral sclerosis (ALS) was initially thought to be associated with oxidative
stress when it was first linked to mutant superoxide dismutase 1 (SOD1). The subsequent …
stress when it was first linked to mutant superoxide dismutase 1 (SOD1). The subsequent …