Current understanding of the pathways of flavonoid biosynthesis in model and crop plants

T Tohge, LP de Souza, AR Fernie - Journal of experimental …, 2017 - academic.oup.com
Flavonoids are a signature class of secondary metabolites formed from a relatively simple
collection of scaffolds. They are extensively decorated by chemical reactions including …

ROS signaling: the new wave?

R Mittler, S Vanderauwera, N Suzuki, GAD Miller… - Trends in plant …, 2011 - cell.com
Reactive oxygen species (ROS) play a multitude of signaling roles in different organisms
from bacteria to mammalian cells. They were initially thought to be toxic byproducts of …

PLAZA 5.0: extending the scope and power of comparative and functional genomics in plants

M Van Bel, F Silvestri, EM Weitz, L Kreft… - Nucleic Acids …, 2022 - academic.oup.com
PLAZA is a platform for comparative, evolutionary, and functional plant genomics. It makes a
broad set of genomes, data types and analysis tools available to researchers through a user …

PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics

M Van Bel, T Diels, E Vancaester, L Kreft… - Nucleic acids …, 2018 - academic.oup.com
Abstract PLAZA (https://bioinformatics. psb. ugent. be/plaza) is a plant-oriented online
resource for comparative, evolutionary and functional genomics. The PLAZA platform …

Ancestral polyploidy in seed plants and angiosperms

Y Jiao, NJ Wickett, S Ayyampalayam, AS Chanderbali… - Nature, 2011 - nature.com
Abstract Whole-genome duplication (WGD), or polyploidy, followed by gene loss and
diploidization has long been recognized as an important evolutionary force in animals, fungi …

Phytozome: a comparative platform for green plant genomics

DM Goodstein, S Shu, R Howson… - Nucleic acids …, 2012 - academic.oup.com
The number of sequenced plant genomes and associated genomic resources is growing
rapidly with the advent of both an increased focus on plant genomics from funding agencies …

Phylogeny and molecular evolution of the green algae

F Leliaert, DR Smith, H Moreau… - Critical reviews in …, 2012 - Taylor & Francis
The green lineage (Viridiplantae) comprises the green algae and their descendants the land
plants, and is one of the major groups of oxygenic photosynthetic eukaryotes. Current …

Charting plant gene functions in the multi-omics and single-cell era

T Depuydt, B De Rybel, K Vandepoele - Trends in Plant Science, 2023 - cell.com
Despite the increased access to high-quality plant genome sequences, the set of genes with
a known function remains far from complete. With the advent of novel bulk and single-cell …

PLAZA 3.0: an access point for plant comparative genomics

S Proost, M Van Bel, D Vaneechoutte… - Nucleic acids …, 2015 - academic.oup.com
Comparative sequence analysis has significantly altered our view on the complexity of
genome organization and gene functions in different kingdoms. PLAZA 3.0 is designed to …

The genome sequence of the orchid Phalaenopsis equestris

J Cai, X Liu, K Vanneste, S Proost, WC Tsai, KW Liu… - Nature …, 2015 - nature.com
Orchidaceae, renowned for its spectacular flowers and other reproductive and ecological
adaptations, is one of the most diverse plant families. Here we present the genome …