Phylogenomics and the flowering plant tree of life

C Guo, Y Luo, LM Gao, TS Yi, HT Li… - Journal of Integrative …, 2023 - Wiley Online Library
The advances accelerated by next‐generation sequencing and long‐read sequencing
technologies continue to provide an impetus for plant phylogenetic study. In the past …

[HTML][HTML] The evolutionary emergence of land plants

PCJ Donoghue, CJ Harrison, J Paps, H Schneider - Current Biology, 2021 - cell.com
There can be no doubt that early land plant evolution transformed the planet but, until
recently, how and when this was achieved was unclear. Coincidence in the first appearance …

Integrated phylogenomics and fossil data illuminate the evolution of beetles

C Cai, E Tihelka, M Giacomelli… - Royal Society …, 2022 - royalsocietypublishing.org
Beetles constitute the most biodiverse animal order with over 380 000 described species
and possibly several million more yet unnamed. Recent phylogenomic studies have arrived …

ATP synthase evolution on a cross-braced dated tree of life

TA Mahendrarajah, ERR Moody, D Schrempf… - Nature …, 2023 - nature.com
The timing of early cellular evolution, from the divergence of Archaea and Bacteria to the
origin of eukaryotes, is poorly constrained. The ATP synthase complex is thought to have …

[HTML][HTML] Single-cell transcriptomics identifies conserved regulators of neuroglandular lineages

J Steger, AG Cole, A Denner, T Lebedeva… - Cell Reports, 2022 - cell.com
Communication in bilaterian nervous systems is mediated by electrical and secreted signals;
however, the evolutionary origin and relation of neurons to other secretory cell types has not …

The evolution of insect biodiversity

E Tihelka, C Cai, M Giacomelli, J Lozano-Fernandez… - Current Biology, 2021 - cell.com
Insects comprise over half of all described animal species. Together with the Protura
(coneheads), Collembola (springtails) and Diplura (two-pronged bristletails), insects form …

Phylogenomic subsampling and the search for phylogenetically reliable loci

N Mongiardino Koch - Molecular Biology and Evolution, 2021 - academic.oup.com
Phylogenomic subsampling is a procedure by which small sets of loci are selected from
large genome-scale data sets and used for phylogenetic inference. This step is often …

Population genomics meets the taxonomy of cyanobacteria

P Dvořák, E Jahodářová, A Stanojković, S Skoupý… - Algal Research, 2023 - Elsevier
The emergence of cyanobacterial species (speciation) is driven by mutation, selection, gene
flow, and geographical and ecological isolation. Population genomics explores the process …

An estimate of the deepest branches of the tree of life from ancient vertically evolving genes

ERR Moody, TA Mahendrarajah, N Dombrowski… - elife, 2022 - elifesciences.org
Core gene phylogenies provide a window into early evolution, but different gene sets and
analytical methods have yielded substantially different views of the tree of life. Trees inferred …

Ant backbone phylogeny resolved by modelling compositional heterogeneity among sites in genomic data

C Cai - Communications Biology, 2024 - nature.com
Ants are the most ubiquitous and ecologically dominant arthropods on Earth, and
understanding their phylogeny is crucial for deciphering their character evolution, species …