Computational tools to unmask transposable elements
A substantial proportion of the genome of many species is derived from transposable
elements (TEs). Moreover, through various self-copying mechanisms, TEs continue to …
elements (TEs). Moreover, through various self-copying mechanisms, TEs continue to …
Multiple wheat genomes reveal global variation in modern breeding
Advances in genomics have expedited the improvement of several agriculturally important
crops but similar efforts in wheat (Triticum spp.) have been more challenging. This is largely …
crops but similar efforts in wheat (Triticum spp.) have been more challenging. This is largely …
Sweet sorghum as biofuel feedstock: recent advances and available resources
Sweet sorghum is a promising target for biofuel production. It is a C4 crop with low input
requirements and accumulates high levels of sugars in its stalks. However, large-scale …
requirements and accumulates high levels of sugars in its stalks. However, large-scale …
The barley pan-genome reveals the hidden legacy of mutation breeding
Genetic diversity is key to crop improvement. Owing to pervasive genomic structural
variation, a single reference genome assembly cannot capture the full complement of …
variation, a single reference genome assembly cannot capture the full complement of …
A chromosome conformation capture ordered sequence of the barley genome
Cereal grasses of the Triticeae tribe have been the major food source in temperate regions
since the dawn of agriculture. Their large genomes are characterized by a high content of …
since the dawn of agriculture. Their large genomes are characterized by a high content of …
Wild emmer genome architecture and diversity elucidate wheat evolution and domestication
Wheat (Triticum spp.) is one of the founder crops that likely drove the Neolithic transition to
sedentary agrarian societies in the Fertile Crescent more than 10,000 years ago. Identifying …
sedentary agrarian societies in the Fertile Crescent more than 10,000 years ago. Identifying …
The Physcomitrella patens chromosome‐scale assembly reveals moss genome structure and evolution
The draft genome of the moss model, Physcomitrella patens, comprised approximately 2000
unordered scaffolds. In order to enable analyses of genome structure and evolution we …
unordered scaffolds. In order to enable analyses of genome structure and evolution we …
Genome sequences of five Sitopsis species of Aegilops and the origin of polyploid wheat B subgenome
Common wheat (Triticum aestivum, BBAADD) is a major staple food crop worldwide. The
diploid progenitors of the A and D subgenomes have been unequivocally identified; that of …
diploid progenitors of the A and D subgenomes have been unequivocally identified; that of …
SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations
CM Hooper, IR Castleden, SK Tanz… - Nucleic acids …, 2017 - academic.oup.com
The SUBcellular location database for Arabidopsis proteins (SUBA4, http://suba. live) is a
comprehensive collection of manually curated published data sets of large-scale subcellular …
comprehensive collection of manually curated published data sets of large-scale subcellular …
Origin and evolution of the triploid cultivated banana genome
X Li, S Yu, Z Cheng, X Chang, Y Yun, M Jiang… - Nature Genetics, 2024 - nature.com
Most fresh bananas belong to the Cavendish and Gros Michel subgroups. Here, we report
chromosome-scale genome assemblies of Cavendish (1.48 Gb) and Gros Michel (1.33 Gb) …
chromosome-scale genome assemblies of Cavendish (1.48 Gb) and Gros Michel (1.33 Gb) …