Defining and quantifying the core microbiome: challenges and prospects

AT Neu, EE Allen, K Roy - Proceedings of the National …, 2021 - National Acad Sciences
The term “core microbiome” has become widely used in microbial ecology over the last
decade. Broadly, the core microbiome refers to any set of microbial taxa, or the genomic and …

The root microbiome: Community assembly and its contributions to plant fitness

B Bai, W Liu, X Qiu, J Zhang, J Zhang… - Journal of Integrative …, 2022 - Wiley Online Library
The root microbiome refers to the community of microbes living in association with a plant's
roots, and includes mutualists, pathogens, and commensals. Here we focus on recent …

Long-term organic fertilizer substitution increases rice yield by improving soil properties and regulating soil bacteria

J Liu, A Shu, W Song, W Shi, M Li, W Zhang, Z Li, G Liu… - Geoderma, 2021 - Elsevier
Applying organic and inorganic fertilizers together could sustainably increase crop yields.
The effects of long-term organic fertilizer substitution on soil microbial community structure …

Plant domestication shapes rhizosphere microbiome assembly and metabolic functions

H Yue, W Yue, S Jiao, H Kim, YH Lee, G Wei, W Song… - Microbiome, 2023 - Springer
Background The rhizosphere microbiome, which is shaped by host genotypes, root
exudates, and plant domestication, is crucial for sustaining agricultural plant growth. Despite …

[HTML][HTML] Plant microbiome–an account of the factors that shape community composition and diversity

KMG Dastogeer, FH Tumpa, A Sultana, MA Akter… - Current Plant …, 2020 - Elsevier
Plants live in association with diverse microorganisms, collectively called the microbiome.
These microbes live either inside (endosphere) or outside (episphere) of plant tissues …

NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice

J Zhang, YX Liu, N Zhang, B Hu, T **, H Xu… - Nature …, 2019 - nature.com
Nitrogen-use efficiency of indica varieties of rice is superior to that of japonica varieties. We
apply 16S ribosomal RNA gene profiling to characterize root microbiota of 68 indica and 27 …

Modulation of the root microbiome by plant molecules: the basis for targeted disease suppression and plant growth promotion

A Pascale, S Proietti, IS Pantelides… - Frontiers in plant …, 2020 - frontiersin.org
Plants host a mesmerizing diversity of microbes inside and around their roots, known as the
microbiome. The microbiome is composed mostly of fungi, bacteria, oomycetes, and …

Root exudate metabolites drive plant-soil feedbacks on growth and defense by sha** the rhizosphere microbiota

L Hu, CAM Robert, S Cadot, XI Zhang, M Ye… - Nature …, 2018 - nature.com
By changing soil properties, plants can modify their growth environment. Although the soil
microbiota is known to play a key role in the resulting plant-soil feedbacks, the proximal …

Fungal endophytes and their role in agricultural plant protection against pests and pathogens

R Grabka, TW d'Entremont, SJ Adams, AK Walker… - Plants, 2022 - mdpi.com
Virtually all examined plant species harbour fungal endophytes which asymptomatically
infect or colonize living plant tissues, including leaves, branches, stems and roots …

Microbial interactions within the plant holobiont

MA Hassani, P Durán, S Hacquard - Microbiome, 2018 - Springer
Since the colonization of land by ancestral plant lineages 450 million years ago, plants and
their associated microbes have been interacting with each other, forming an assemblage of …