Nipah virus: epidemiology, pathology, immunobiology and advances in diagnosis, vaccine designing and control strategies–a comprehensive review

RK Singh, K Dhama, S Chakraborty, R Tiwari… - Veterinary …, 2019 - Taylor & Francis
Nipah (Nee-pa) viral disease is a zoonotic infection caused by Nipah virus (NiV), a
paramyxovirus belonging to the genus Henipavirus of the family Paramyxoviridae. It is a …

High-throughput genomic data in systematics and phylogenetics

EM Lemmon, AR Lemmon - Annual Review of Ecology …, 2013 - annualreviews.org
High-throughput genomic sequencing is rapidly changing the field of phylogenetics by
decreasing the cost and increasing the quantity and rate of data collection by several orders …

Isolation of SARS-CoV-2-related coronavirus from Malayan pangolins

K **ao, J Zhai, Y Feng, N Zhou, X Zhang, JJ Zou, N Li… - Nature, 2020 - nature.com
The current outbreak of coronavirus disease-2019 (COVID-19) poses unprecedented
challenges to global health. The new coronavirus responsible for this outbreak—severe …

Global diversity and systematics of Hymenochaetaceae with poroid hymenophore

F Wu, LW Zhou, J Vlasák, YC Dai - Fungal Diversity, 2022 - Springer
Taxonomy and phylogeny of poroid Hymenochaetaceae based on the most comprehensive
phylogenetic analyses are presented. A phylogeny based on a combined dataset of ITS and …

ModelTest-NG: a new and scalable tool for the selection of DNA and protein evolutionary models

D Darriba, D Posada, AM Kozlov… - Molecular biology …, 2020 - academic.oup.com
ModelTest-NG is a reimplementation from scratch of jModelTest and ProtTest, two popular
tools for selecting the best-fit nucleotide and amino acid substitution models, respectively …

Systematic revision of Symbiodiniaceae highlights the antiquity and diversity of coral endosymbionts

TC LaJeunesse, JE Parkinson, PW Gabrielson… - Current Biology, 2018 - cell.com
The advent of molecular data has transformed the science of organizing and studying life on
Earth. Genetics-based evidence provides fundamental insights into the diversity, ecology …

[HTML][HTML] Fungal diversity notes 1387–1511: Taxonomic and phylogenetic contributions on genera and species of fungal taxa

S Boonmee, DN Wanasinghe, MS Calabon… - Fungal Diversity, 2021 - Springer
This article is the 13th contribution in the Fungal Diversity Notes series, wherein 125 taxa
from four phyla, ten classes, 31 orders, 69 families, 92 genera and three genera incertae …

SMS: smart model selection in PhyML

V Lefort, JE Longueville… - Molecular biology and …, 2017 - academic.oup.com
Abstract Model selection using likelihood-based criteria (eg, AIC) is one of the first steps in
phylogenetic analysis. One must select both a substitution matrix and a model for rates …

Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza

JC Stein, Y Yu, D Copetti, DJ Zwickl, L Zhang… - Nature …, 2018 - nature.com
The genus Oryza is a model system for the study of molecular evolution over time scales
ranging from a few thousand to 15 million years. Using 13 reference genomes spanning the …

Isolation and characterization of 2019-nCoV-like coronavirus from Malayan pangolins

K **ao, J Zhai, Y Feng, N Zhou, X Zhang, JJ Zou, N Li… - BioRxiv, 2020 - biorxiv.org
The outbreak of 2019-nCoV in the central Chinese city of Wuhan at the end of 2019 poses
unprecedent public health challenges to both China and the rest world. The new …