Bioinformatics methods for mass spectrometry-based proteomics data analysis
Recent advances in mass spectrometry (MS)-based proteomics have enabled tremendous
progress in the understanding of cellular mechanisms, disease progression, and the …
progress in the understanding of cellular mechanisms, disease progression, and the …
Protein analysis by shotgun/bottom-up proteomics
According to Genome Sequencing Project statistics (http://www. ncbi. nlm. nih.
gov/genomes/static/gpstat. html), as of February 16, 2012, complete gene sequences have …
gov/genomes/static/gpstat. html), as of February 16, 2012, complete gene sequences have …
An introduction to mass spectrometry-based proteomics
SR Shuken - Journal of Proteome Research, 2023 - ACS Publications
Mass spectrometry is unmatched in its versatility for studying practically any aspect of the
proteome. Because the foundations of mass spectrometry-based proteomics are complex …
proteome. Because the foundations of mass spectrometry-based proteomics are complex …
Characterization of SARS-CoV-2 proteins reveals Orf6 pathogenicity, subcellular localization, host interactions and attenuation by Selinexor
Abstract Background SARS-CoV-2 causes COVID-19 which has a widely diverse disease
profile. The mechanisms underlying its pathogenicity remain unclear. We set out to identify …
profile. The mechanisms underlying its pathogenicity remain unclear. We set out to identify …
Comet: an open‐source MS/MS sequence database search tool
Proteomics research routinely involves identifying peptides and proteins via MS/MS
sequence database search. Thus the database search engine is an integral tool in many …
sequence database search. Thus the database search engine is an integral tool in many …
[HTML][HTML] ProLuCID: An improved SEQUEST-like algorithm with enhanced sensitivity and specificity
ProLuCID, a new algorithm for peptide identification using tandem mass spectrometry and
protein sequence databases has been developed. This algorithm uses a three tier scoring …
protein sequence databases has been developed. This algorithm uses a three tier scoring …
[HTML][HTML] A census of human soluble protein complexes
Cellular processes often depend on stable physical associations between proteins. Despite
recent progress, knowledge of the composition of human protein complexes remains limited …
recent progress, knowledge of the composition of human protein complexes remains limited …
Reproductive tract extracellular vesicles are sufficient to transmit intergenerational stress and program neurodevelopment
Extracellular vesicles (EVs) are a unique mode of intercellular communication capable of
incredible specificity in transmitting signals involved in cellular function, including germ cell …
incredible specificity in transmitting signals involved in cellular function, including germ cell …
Identification of splice variants and isoforms in transcriptomics and proteomics
Alternative splicing is pivotal to the regulation of gene expression and protein diversity in
eukaryotic cells. The detection of alternative splicing events requires specific omics …
eukaryotic cells. The detection of alternative splicing events requires specific omics …
Quantitative proteomic analysis of histone modifications
Several mechanisms have been proposed for histone marks to exert their functions,
including altering the physical properties of nucleosomes by neutralization of charge via …
including altering the physical properties of nucleosomes by neutralization of charge via …