DNA catalysis: the chemical repertoire of DNAzymes

M Hollenstein - Molecules, 2015 - mdpi.com
Deoxyribozymes or DNAzymes are single-stranded catalytic DNA molecules that are
obtained by combinatorial in vitro selection methods. Initially conceived to function as gene …

Modified Nucleoside Triphosphates for In-vitro Selection Techniques

MA Dellafiore, JM Montserrat, AM Iribarren - Frontiers in Chemistry, 2016 - frontiersin.org
The development of SELEX (Selective Enhancement of Ligands by Exponential Enrichment)
provides a powerful tool for the search of functional oligonucleotides with the ability to bind …

DNA-catalyzed amide hydrolysis

C Zhou, JL Avins, PC Klauser… - Journal of the …, 2016 - ACS Publications
DNA catalysts (deoxyribozymes) for a variety of reactions have been identified by in vitro
selection. However, for certain reactions this identification has not been achieved. One …

Whole cell-SELEX of aptamers with a tyrosine-like side chain against live bacteria

M Renders, E Miller, CH Lam, DM Perrin - Organic & biomolecular …, 2017 - pubs.rsc.org
In an effort to expand the binding and recognition capabilities of aptamers, a nucleoside
triphosphate modified with a phenol that mimics the side chain of tyrosine was used in the …

Selection of aptamers with large hydrophobic 2′-substituents

Q Shao, T Chen, K Sheng, Z Liu, Z Zhang… - Journal of the …, 2020 - ACS Publications
Previously, we evolved a DNA polymerase, SFM4-3, for the recognition of substrates
modified at their 2′ positions with a fluoro, O-methyl, or azido substituent. Here we use …

N 4-acyl-2′-deoxycytidine-5′-triphosphates for the enzymatic synthesis of modified DNA

J Jakubovska, D Tauraitė, L Birštonas… - Nucleic acids …, 2018 - academic.oup.com
A huge diversity of modified nucleobases is used as a tool for studying DNA and RNA. Due
to practical reasons, the most suitable positions for modifications are C5 of pyrimidines and …

Modified nucleoside triphosphates in bacterial research for in vitro and live-cell applications

A Espinasse, HK Lembke, AA Cao… - RSC chemical biology, 2020 - pubs.rsc.org
Modified nucleoside triphosphates (NTPs) are invaluable tools to probe bacterial enzymatic
mechanisms, develop novel genetic material, and engineer drugs and proteins with new …

Bottlebrush DNA-primed rolling circle amplification for sensitive detection of biomolecules

X Chen, R Zhang, L Peng, Y Du… - ACS Applied Nano …, 2023 - ACS Publications
Development of nucleic acids containing unnatural moieties has expanded the scope of
genetic materials, and modifications of nucleobases have been extensively explored and …

Systematic study of constraints imposed by modified nucleoside triphosphates with protein-like side chains for use in in vitro selection

Y Wang, N Ng, E Liu, CH Lam… - Organic & Biomolecular …, 2017 - pubs.rsc.org
Successful selection of modified DNAzymes depends on the potential for modified
nucleoside triphosphates (dNTPs) to replace their unmodified counterparts in enzyme …

[HTML][HTML] Therapeutic interventions into innate immune diseases by means of aptamers

F Yasmeen, H Seo, N Javaid, MS Kim, S Choi - Pharmaceutics, 2020 - mdpi.com
The immune system plays a crucial role in the body's defense system against various
pathogens, such as bacteria, viruses, and parasites, as well as recognizes non-self-and self …