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Antimicrobial resistance monitoring of water environments: a framework for standardized methods and quality control
Antimicrobial resistance (AMR) is a grand societal challenge with important dimensions in
the water environment that contribute to its evolution and spread. Environmental monitoring …
the water environment that contribute to its evolution and spread. Environmental monitoring …
The use of next generation sequencing for improving food safety: Translation into practice
Abstract Next Generation Sequencing (NGS) combined with powerful bioinformatic
approaches are revolutionising food microbiology. Whole genome sequencing (WGS) of …
approaches are revolutionising food microbiology. Whole genome sequencing (WGS) of …
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
Antimicrobial resistance (AMR) is a serious threat to global public health, but obtaining
representative data on AMR for healthy human populations is difficult. Here, we use …
representative data on AMR for healthy human populations is difficult. Here, we use …
Genome-resolved metagenomics reveals site-specific diversity of episymbiotic CPR bacteria and DPANN archaea in groundwater ecosystems
Candidate phyla radiation (CPR) bacteria and DPANN archaea are unisolated, small-celled
symbionts that are often detected in groundwater. The effects of groundwater geochemistry …
symbionts that are often detected in groundwater. The effects of groundwater geochemistry …
Recommendations for the use of metagenomics for routine monitoring of antibiotic resistance in wastewater and impacted aquatic environments
Shotgun metagenomic sequencing of the collective genomic information carried across
microbial communities is emerging as a powerful approach for monitoring antibiotic …
microbial communities is emerging as a powerful approach for monitoring antibiotic …
Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries
Antimicrobial resistance (AMR) in bacteria and associated human morbidity and mortality is
increasing. The use of antimicrobials in livestock selects for AMR that can subsequently be …
increasing. The use of antimicrobials in livestock selects for AMR that can subsequently be …
Impact of sequencing depth on the characterization of the microbiome and resistome
Developments in high-throughput next generation sequencing (NGS) technology have
rapidly advanced the understanding of overall microbial ecology as well as occurrence and …
rapidly advanced the understanding of overall microbial ecology as well as occurrence and …
Milk microbiota: what are we exactly talking about?
The development of powerful sequencing techniques has allowed, albeit with some biases,
the identification and inventory of complex microbial communities that inhabit different body …
the identification and inventory of complex microbial communities that inhabit different body …
Whole genome sequencing and metagenomics for outbreak investigation, source attribution and risk assessment of food‐borne microorganisms
EFSA Panel on Biological Hazards (EFSA … - Efsa …, 2019 - Wiley Online Library
This Opinion considers the application of whole genome sequencing (WGS) and
metagenomics for outbreak investigation, source attribution and risk assessment of food …
metagenomics for outbreak investigation, source attribution and risk assessment of food …
[HTML][HTML] Comparison of DNA extraction methods for human gut microbial community profiling
The human gut harbors a vast range of microbes that have significant impact on health and
disease. Therefore, gut microbiome profiling holds promise for use in early diagnosis and …
disease. Therefore, gut microbiome profiling holds promise for use in early diagnosis and …