Hundreds of vertebrate genomes have been sequenced and assembled to date. However,
most sequencing projects have ignored the sex chromosomes unique to the heterogametic …

Levels and patterns of genetic diversity can provide insights into a population's history. In
species with sex chromosomes, differences between genomic regions with unique …

Our closest living relatives, chimpanzees and bonobos, have a complex demographic
history. We analyzed the high-coverage whole genomes of 75 wild-born chimpanzees and …

Ancient DNA has provided new insights into many aspects of human history. However, we
lack comprehensive studies of the Y chromosomes of Denisovans and Neanderthals …

Motivation: A series of methods in population genetics use multilocus genotype data to
assign individuals membership in latent clusters. These methods belong to a broad class of …

While knowledge of protein-protein interactions (PPIs) is critical for understanding virus-host
relationships, limitations on the scalability of high-throughput methods have hampered their …

Knowledge on the population history of endangered species is critical for conservation, but
whole-genome data on chimpanzees (Pan troglodytes) is geographically sparse. Here, we …

Levels and patterns of genetic diversity can provide insights into a population's history. In
species with sex chromosomes, differences between genomic regions with unique …

Theropithecus gelada, the last surviving species of this genus, occupy a unique and highly
specialised ecological niche in the Ethiopian highlands. A subdivision into three …

Amplicons—large, highly identical segmental duplications—are a prominent feature of
mammalian Y chromosomes. Although they encode genes essential for fertility, these …