Tools to support the automation of systematic reviews: a sco** review

H Khalil, D Ameen, A Zarnegar - Journal of Clinical Epidemiology, 2022 - Elsevier
Objective The objectives of this sco** review are to identify the reliability and validity of the
available tools, their limitations and any recommendations to further improve the use of …

Towards the automation of systematic reviews using natural language processing, machine learning, and deep learning: a comprehensive review

R Ofori-Boateng, M Aceves-Martins… - Artificial intelligence …, 2024 - Springer
Systematic reviews (SRs) constitute a critical foundation for evidence-based decision-
making and policy formulation across various disciplines, particularly in healthcare and …

Annotation of biologically relevant ligands in UniProtKB using ChEBI

E Coudert, S Gehant, E De Castro, M Pozzato… - …, 2023 - academic.oup.com
Motivation To provide high quality, computationally tractable annotation of binding sites for
biologically relevant (cognate) ligands in UniProtKB using the chemical ontology ChEBI …

UniProt: the universal protein knowledgebase in 2023

Nucleic acids research, 2023 - academic.oup.com
The aim of the UniProt Knowledgebase is to provide users with a comprehensive, high-
quality and freely accessible set of protein sequences annotated with functional information …

UniProt: the Universal Protein Knowledgebase in 2025

A Bateman, MJ Martin, S Orchard, M Magrane… - Nucleic acids …, 2024 - par.nsf.gov
The aim of the UniProt Knowledgebase (UniProtKB; https://www. uniprot. org/) is to provide
users with a comprehensive, high-quality and freely accessible set of protein sequences …

Rhea, the reaction knowledgebase in 2022

P Bansal, A Morgat, KB Axelsen… - Nucleic acids …, 2022 - academic.oup.com
Abstract Rhea (https://www. rhea-db. org) is an expert-curated knowledgebase of
biochemical reactions based on the chemical ontology ChEBI (Chemical Entities of …

Enhancing the Polygenic Score Catalog with tools for score calculation and ancestry normalization

SA Lambert, B Wingfield, JT Gibson, L Gil… - Nature Genetics, 2024 - nature.com
Polygenic scores (PGSs) have transformed human genetic research and have numerous
potential clinical applications. Here we present a series of recent enhancements to the PGS …

The NHGRI-EBI GWAS Catalog: standards for reusability, sustainability and diversity

M Cerezo, E Sollis, Y Ji, E Lewis, A Abid… - Nucleic Acids …, 2025 - academic.oup.com
Abstract The NHGRI-EBI GWAS Catalog serves as a vital resource for the genetic research
community, providing access to the most comprehensive database of human GWAS results …

Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms

BI Arshinoff, GA Cary, K Karimi, S Foley… - Nucleic acids …, 2022 - academic.oup.com
Abstract Echinobase (www. echinobase. org) is a third generation web resource supporting
genomic research on echinoderms. The new version was built by cloning the mature …

LitCovid in 2022: an information resource for the COVID-19 literature

Q Chen, A Allot, R Leaman, CH Wei… - Nucleic Acids …, 2023 - academic.oup.com
Abstract LitCovid (https://www. ncbi. nlm. nih. gov/research/coronavirus/)—first launched in
February 2020—is a first-of-its-kind literature hub for tracking up-to-date published research …