The use of next generation sequencing for improving food safety: Translation into practice
Abstract Next Generation Sequencing (NGS) combined with powerful bioinformatic
approaches are revolutionising food microbiology. Whole genome sequencing (WGS) of …
approaches are revolutionising food microbiology. Whole genome sequencing (WGS) of …
Sequencing and beyond: integrating molecular'omics' for microbial community profiling
High-throughput DNA sequencing has proven invaluable for investigating diverse
environmental and host-associated microbial communities. In this Review, we discuss …
environmental and host-associated microbial communities. In this Review, we discuss …
Introducing the bacterial and viral bioinformatics resource center (BV-BRC): a resource combining PATRIC, IRD and ViPR
Abstract The National Institute of Allergy and Infectious Diseases (NIAID) established the
Bioinformatics Resource Center (BRC) program to assist researchers with analyzing the …
Bioinformatics Resource Center (BRC) program to assist researchers with analyzing the …
Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine
The human microbiome influences the efficacy and safety of a wide variety of commonly
prescribed drugs. Designing precision medicine approaches that incorporate microbial …
prescribed drugs. Designing precision medicine approaches that incorporate microbial …
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities
Abstract The PathoSystems Resource Integration Center (PATRIC) is the bacterial
Bioinformatics Resource Center funded by the National Institute of Allergy and Infectious …
Bioinformatics Resource Center funded by the National Institute of Allergy and Infectious …
Bifidobacterium infantis treatment promotes weight gain in Bangladeshi infants with severe acute malnutrition
Disrupted development of the gut microbiota is a contributing cause of childhood
malnutrition. Bifidobacterium longum subspecies infantis is a prominent early colonizer of …
malnutrition. Bifidobacterium longum subspecies infantis is a prominent early colonizer of …
Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center
Abstract The Pathosystems Resource Integration Center (PATRIC) is the bacterial
Bioinformatics Resource Center (https://www. patricbrc. org). Recent changes to PATRIC …
Bioinformatics Resource Center (https://www. patricbrc. org). Recent changes to PATRIC …
Gut microbial metabolite TMAO enhances platelet hyperreactivity and thrombosis risk
Normal platelet function is critical to blood hemostasis and maintenance of a closed
circulatory system. Heightened platelet reactivity, however, is associated with …
circulatory system. Heightened platelet reactivity, however, is associated with …
Effects of microbiota-directed foods in gnotobiotic animals and undernourished children
INTRODUCTION There is a dimension to postnatal human development that involves
assembly of microbial communities in different body habitats, including the gut. Children with …
assembly of microbial communities in different body habitats, including the gut. Children with …
Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota
Genome-scale metabolic models derived from human gut metagenomic data can be used
as a framework to elucidate how microbial communities modulate human metabolism and …
as a framework to elucidate how microbial communities modulate human metabolism and …