Piercing the dark matter: bioinformatics of long-range sequencing and map**
Several new genomics technologies have become available that offer long-read sequencing
or long-range map** with higher throughput and higher resolution analysis than ever …
or long-range map** with higher throughput and higher resolution analysis than ever …
Towards precision medicine
EA Ashley - Nature Reviews Genetics, 2016 - nature.com
There is great potential for genome sequencing to enhance patient care through improved
diagnostic sensitivity and more precise therapeutic targeting. To maximize this potential …
diagnostic sensitivity and more precise therapeutic targeting. To maximize this potential …
Jasmine and Iris: population-scale structural variant comparison and analysis
The availability of long reads is revolutionizing studies of structural variants (SVs). However,
because SVs vary across individuals and are discovered through imprecise read …
because SVs vary across individuals and are discovered through imprecise read …
Strelka2: fast and accurate calling of germline and somatic variants
Abstract We describe Strelka2 (https://github. com/Illumina/strelka), an open-source small-
variant-calling method for research and clinical germline and somatic sequencing …
variant-calling method for research and clinical germline and somatic sequencing …
Scaling accurate genetic variant discovery to tens of thousands of samples
Comprehensive disease gene discovery in both common and rare diseases will require the
efficient and accurate detection of all classes of genetic variation across tens to hundreds of …
efficient and accurate detection of all classes of genetic variation across tens to hundreds of …
Organoid profiling identifies common responders to chemotherapy in pancreatic cancer
Pancreatic cancer is the most lethal common solid malignancy. Systemic therapies are often
ineffective, and predictive biomarkers to guide treatment are urgently needed. We generated …
ineffective, and predictive biomarkers to guide treatment are urgently needed. We generated …
[HTML][HTML] Engineering quantitative trait variation for crop improvement by genome editing
Major advances in crop yields are needed in the coming decades. However, plant breeding
is currently limited by incremental improvements in quantitative traits that often rely on …
is currently limited by incremental improvements in quantitative traits that often rely on …
[HTML][HTML] The CD155/TIGIT axis promotes and maintains immune evasion in neoantigen-expressing pancreatic cancer
WA Freed-Pastor, LJ Lambert, ZA Ely, NB Pattada… - Cancer cell, 2021 - cell.com
The CD155/TIGIT axis can be co-opted during immune evasion in chronic viral infections
and cancer. Pancreatic adenocarcinoma (PDAC) is a highly lethal malignancy, and immune …
and cancer. Pancreatic adenocarcinoma (PDAC) is a highly lethal malignancy, and immune …
Low neoantigen expression and poor T-cell priming underlie early immune escape in colorectal cancer
Immune evasion is a hallmark of cancer and therapies that restore immune surveillance
have proven highly effective in cancers with high tumor mutation burden (TMB)(for example …
have proven highly effective in cancers with high tumor mutation burden (TMB)(for example …
The contribution of de novo coding mutations to autism spectrum disorder
Whole exome sequencing has proven to be a powerful tool for understanding the genetic
architecture of human disease. Here we apply it to more than 2,500 simplex families, each …
architecture of human disease. Here we apply it to more than 2,500 simplex families, each …