DNA secondary structures: stability and function of G-quadruplex structures

ML Bochman, K Paeschke, VA Zakian - Nature Reviews Genetics, 2012 - nature.com
In addition to the canonical double helix, DNA can fold into various other inter-and
intramolecular secondary structures. Although many such structures were long thought to be …

G-quadruplexes and helicases

O Mendoza, A Bourdoncle, JB Boulé… - Nucleic acids …, 2016 - academic.oup.com
Guanine-rich DNA strands can fold in vitro into non-canonical DNA structures called G-
quadruplexes. These structures may be very stable under physiological conditions …

Re-evaluation of G-quadruplex propensity with G4Hunter

A Bedrat, L Lacroix, JL Mergny - Nucleic acids research, 2016 - academic.oup.com
Critical evidence for the biological relevance of G-quadruplexes (G4) has recently been
obtained in seminal studies performed in a variety of organisms. Four-stranded G …

G-quadruplexes: prediction, characterization, and biological application

CK Kwok, CJ Merrick - Trends in biotechnology, 2017 - cell.com
Guanine (G)-rich sequences in nucleic acids can assemble into G-quadruplex structures that
involve G-quartets linked by loop nucleotides. The structural and topological diversity of G …

[HTML][HTML] Hexanucleotide repeats in ALS/FTD form length-dependent RNA foci, sequester RNA binding proteins, and are neurotoxic

YB Lee, HJ Chen, JN Peres, J Gomez-Deza, J Attig… - Cell reports, 2013 - cell.com
Summary The GGGGCC (G4C2) intronic repeat expansion within C9ORF72 is the most
common genetic cause of amyotrophic lateral sclerosis (ALS) and frontotemporal dementia …

rG4-seq reveals widespread formation of G-quadruplex structures in the human transcriptome

CK Kwok, G Marsico, AB Sahakyan, VS Chambers… - Nature …, 2016 - nature.com
We introduce RNA G-quadruplex sequencing (rG4-seq), a transcriptome-wide RNA G-
quadruplex (rG4) profiling method that couples rG4-mediated reverse transcriptase stalling …

RNA G-quadruplexes (rG4s): genomics and biological functions

K Lyu, EYC Chow, X Mou, TF Chan… - Nucleic acids …, 2021 - academic.oup.com
Abstract G-quadruplexes (G4s) are non-classical DNA or RNA secondary structures that
have been first observed decades ago. Over the years, these four-stranded structural motifs …

Regulation of long non-coding RNAs and genome dynamics by the RNA surveillance machinery

L Nair, H Chung, U Basu - Nature reviews Molecular cell biology, 2020 - nature.com
Much of the mammalian genome is transcribed, generating long non-coding RNAs
(lncRNAs) that can undergo post-transcriptional surveillance whereby only a subset of the …

RNA G-quadruplexes are globally unfolded in eukaryotic cells and depleted in bacteria

JU Guo, DP Bartel - Science, 2016 - science.org
INTRODUCTION Many cellular RNAs contain regions that fold into stable structures required
for function. Both Watson− Crick and noncanonical interactions can play important roles in …

RNA modifications and structures cooperate to guide RNA–protein interactions

CJT Lewis, T Pan, A Kalsotra - Nature reviews Molecular cell biology, 2017 - nature.com
An emerging body of evidence indicates that post-transcriptional gene regulation relies not
only on the sequence of mRNAs but also on their folding into intricate secondary structures …