Sixty-five years of the long march in protein secondary structure prediction: the final stretch?

Y Yang, J Gao, J Wang, R Heffernan… - Briefings in …, 2018‏ - academic.oup.com
Protein secondary structure prediction began in 1951 when Pauling and Corey predicted
helical and sheet conformations for protein polypeptide backbone even before the first …

Protein secondary structure prediction: a review of progress and directions

T Smolarczyk, I Roterman-Konieczna… - Current …, 2020‏ - ingentaconnect.com
Background: Over the last few decades, a search for the theory of protein folding has grown
into a full-fledged research field at the intersection of biology, chemistry and informatics …

Protein secondary structure prediction using cascaded convolutional and recurrent neural networks

Z Li, Y Yu - arxiv preprint arxiv:1604.07176, 2016‏ - arxiv.org
Protein secondary structure prediction is an important problem in bioinformatics. Inspired by
the recent successes of deep neural networks, in this paper, we propose an end-to-end …

SAINT: self-attention augmented inception-inside-inception network improves protein secondary structure prediction

MR Uddin, S Mahbub, MS Rahman, MS Bayzid - Bioinformatics, 2020‏ - academic.oup.com
Motivation Protein structures provide basic insight into how they can interact with other
proteins, their functions and biological roles in an organism. Experimental methods (eg X …

A systematic review on popularity, application and characteristics of protein secondary structure prediction tools

E Kashani-Amin, O Tabatabaei-Malazy… - Current drug …, 2019‏ - ingentaconnect.com
Background: Prediction of proteins' secondary structure is one of the major steps in the
generation of homology models. These models provide structural information which is used …

CNNH_PSS: protein 8-class secondary structure prediction by convolutional neural network with highway

J Zhou, H Wang, Z Zhao, R Xu, Q Lu - BMC bioinformatics, 2018‏ - Springer
Background Protein secondary structure is the three dimensional form of local segments of
proteins and its prediction is an important problem in protein tertiary structure prediction …

Ensemble deep learning models for protein secondary structure prediction using bidirectional temporal convolution and bidirectional long short-term memory

L Yuan, Y Ma, Y Liu - Frontiers in Bioengineering and Biotechnology, 2023‏ - frontiersin.org
Protein secondary structure prediction (PSSP) is a challenging task in computational
biology. However, existing models with deep architectures are not sufficient and …

DLBLS_SS: protein secondary structure prediction using deep learning and broad learning system

L Yuan, X Hu, Y Ma, Y Liu - RSC advances, 2022‏ - pubs.rsc.org
Protein secondary structure prediction (PSSP) is not only beneficial to the study of protein
structure and function but also to the development of drugs. As a challenging task in …

Protein secondary structure prediction based on the fuzzy support vector machine with the hyperplane optimization

S **e, Z Li, H Hu - Gene, 2018‏ - Elsevier
The prediction of the protein secondary structure is a crucial point in bioinformatics and
related fields. In the last years, machine learning methods have become a valuable tool …

Protein secondary structure prediction using a lightweight convolutional network and label distribution aware margin loss

W Yang, Z Hu, L Zhou, Y ** - Knowledge-Based Systems, 2022‏ - Elsevier
Protein secondary structure prediction (PSSP) is an important task in computational
molecular biology. Recently, deep neural networks have demonstrated great potential in …