PubMed and beyond: a survey of web tools for searching biomedical literature

Z Lu - Database, 2011 - academic.oup.com
The past decade has witnessed the modern advances of high-throughput technology and
rapid growth of research capacity in producing large-scale biological data, both of which …

Community challenges in biomedical text mining over 10 years: success, failure and the future

CC Huang, Z Lu - Briefings in bioinformatics, 2016 - academic.oup.com
One effective way to improve the state of the art is through competitions. Following the
success of the Critical Assessment of protein Structure Prediction (CASP) in bioinformatics …

[HTML][HTML] A corpus with multi-level annotations of patients, interventions and outcomes to support language processing for medical literature

B Nye, JJ Li, R Patel, Y Yang, IJ Marshall… - Proceedings of the …, 2018 - ncbi.nlm.nih.gov
We present a corpus of 5,000 richly annotated abstracts of medical articles describing
clinical randomized controlled trials. Annotations include demarcations of text spans that …

Emerging information technologies for enhanced healthcare

JJ Yang, J Li, J Mulder, Y Wang, S Chen, H Wu… - Computers in …, 2015 - Elsevier
The appropriate collection and consumption of electronic health information about an
individual patient or population is the bedrock of modern healthcare, where electronic …

Understanding PubMed® user search behavior through log analysis

R Islamaj Dogan, GC Murray, A Névéol, Z Lu - Database, 2009 - academic.oup.com
This article reports on a detailed investigation of PubMed users' needs and behavior as a
step toward improving biomedical information retrieval. PubMed is providing free service to …

DeepMeSH: deep semantic representation for improving large-scale MeSH indexing

S Peng, R You, H Wang, C Zhai, H Mamitsuka… - …, 2016 - academic.oup.com
Abstract Motivation: Medical Subject Headings (MeSH) indexing, which is to assign a set of
MeSH main headings to citations, is crucial for many important tasks in biomedical text …

How user intelligence is improving PubMed

N Fiorini, R Leaman, DJ Lipman, Z Lu - Nature biotechnology, 2018 - nature.com
PubMed is a widely used search engine for biomedical literature. It is developed and
maintained by the US National Library of Medicine/National Center for Biotechnology …

[HTML][HTML] Automated MeSH term suggestion for effective query formulation in systematic reviews literature search

S Wang, H Scells, B Koopman, G Zuccon - Intelligent Systems with …, 2022 - Elsevier
High-quality medical systematic reviews require comprehensive literature searches to
ensure the recommendations and outcomes are sufficiently reliable. Indeed, searching for …

Esdrank: Connecting query and documents through external semi-structured data

C **ong, J Callan - Proceedings of the 24th ACM international on …, 2015 - dl.acm.org
This paper presents EsdRank, a new technique for improving ranking using external semi-
structured data such as controlled vocabularies and knowledge bases. EsdRank treats …

Crowdsourcing in biomedicine: challenges and opportunities

R Khare, BM Good, R Leaman, AI Su… - Briefings in …, 2016 - academic.oup.com
The use of crowdsourcing to solve important but complex problems in biomedical and
clinical sciences is growing and encompasses a wide variety of approaches. The crowd is …