PubMed and beyond: a survey of web tools for searching biomedical literature
Z Lu - Database, 2011 - academic.oup.com
The past decade has witnessed the modern advances of high-throughput technology and
rapid growth of research capacity in producing large-scale biological data, both of which …
rapid growth of research capacity in producing large-scale biological data, both of which …
Community challenges in biomedical text mining over 10 years: success, failure and the future
CC Huang, Z Lu - Briefings in bioinformatics, 2016 - academic.oup.com
One effective way to improve the state of the art is through competitions. Following the
success of the Critical Assessment of protein Structure Prediction (CASP) in bioinformatics …
success of the Critical Assessment of protein Structure Prediction (CASP) in bioinformatics …
[HTML][HTML] A corpus with multi-level annotations of patients, interventions and outcomes to support language processing for medical literature
We present a corpus of 5,000 richly annotated abstracts of medical articles describing
clinical randomized controlled trials. Annotations include demarcations of text spans that …
clinical randomized controlled trials. Annotations include demarcations of text spans that …
Emerging information technologies for enhanced healthcare
The appropriate collection and consumption of electronic health information about an
individual patient or population is the bedrock of modern healthcare, where electronic …
individual patient or population is the bedrock of modern healthcare, where electronic …
Understanding PubMed® user search behavior through log analysis
This article reports on a detailed investigation of PubMed users' needs and behavior as a
step toward improving biomedical information retrieval. PubMed is providing free service to …
step toward improving biomedical information retrieval. PubMed is providing free service to …
DeepMeSH: deep semantic representation for improving large-scale MeSH indexing
Abstract Motivation: Medical Subject Headings (MeSH) indexing, which is to assign a set of
MeSH main headings to citations, is crucial for many important tasks in biomedical text …
MeSH main headings to citations, is crucial for many important tasks in biomedical text …
How user intelligence is improving PubMed
PubMed is a widely used search engine for biomedical literature. It is developed and
maintained by the US National Library of Medicine/National Center for Biotechnology …
maintained by the US National Library of Medicine/National Center for Biotechnology …
[HTML][HTML] Automated MeSH term suggestion for effective query formulation in systematic reviews literature search
High-quality medical systematic reviews require comprehensive literature searches to
ensure the recommendations and outcomes are sufficiently reliable. Indeed, searching for …
ensure the recommendations and outcomes are sufficiently reliable. Indeed, searching for …
Esdrank: Connecting query and documents through external semi-structured data
This paper presents EsdRank, a new technique for improving ranking using external semi-
structured data such as controlled vocabularies and knowledge bases. EsdRank treats …
structured data such as controlled vocabularies and knowledge bases. EsdRank treats …
Crowdsourcing in biomedicine: challenges and opportunities
The use of crowdsourcing to solve important but complex problems in biomedical and
clinical sciences is growing and encompasses a wide variety of approaches. The crowd is …
clinical sciences is growing and encompasses a wide variety of approaches. The crowd is …