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PubMed and beyond: a survey of web tools for searching biomedical literature
Z Lu - Database, 2011 - academic.oup.com
The past decade has witnessed the modern advances of high-throughput technology and
rapid growth of research capacity in producing large-scale biological data, both of which …
rapid growth of research capacity in producing large-scale biological data, both of which …
Community challenges in biomedical text mining over 10 years: success, failure and the future
CC Huang, Z Lu - Briefings in bioinformatics, 2016 - academic.oup.com
One effective way to improve the state of the art is through competitions. Following the
success of the Critical Assessment of protein Structure Prediction (CASP) in bioinformatics …
success of the Critical Assessment of protein Structure Prediction (CASP) in bioinformatics …
A corpus with multi-level annotations of patients, interventions and outcomes to support language processing for medical literature
We present a corpus of 5,000 richly annotated abstracts of medical articles describing
clinical randomized controlled trials. Annotations include demarcations of text spans that …
clinical randomized controlled trials. Annotations include demarcations of text spans that …
Emerging information technologies for enhanced healthcare
The appropriate collection and consumption of electronic health information about an
individual patient or population is the bedrock of modern healthcare, where electronic …
individual patient or population is the bedrock of modern healthcare, where electronic …
Understanding PubMed® user search behavior through log analysis
R Islamaj Dogan, GC Murray, A Névéol, Z Lu - Database, 2009 - academic.oup.com
This article reports on a detailed investigation of PubMed users' needs and behavior as a
step toward improving biomedical information retrieval. PubMed is providing free service to …
step toward improving biomedical information retrieval. PubMed is providing free service to …
DeepMeSH: deep semantic representation for improving large-scale MeSH indexing
Abstract Motivation: Medical Subject Headings (MeSH) indexing, which is to assign a set of
MeSH main headings to citations, is crucial for many important tasks in biomedical text …
MeSH main headings to citations, is crucial for many important tasks in biomedical text …
Crowdsourcing in biomedicine: challenges and opportunities
The use of crowdsourcing to solve important but complex problems in biomedical and
clinical sciences is growing and encompasses a wide variety of approaches. The crowd is …
clinical sciences is growing and encompasses a wide variety of approaches. The crowd is …
How user intelligence is improving PubMed
PubMed is a widely used search engine for biomedical literature. It is developed and
maintained by the US National Library of Medicine/National Center for Biotechnology …
maintained by the US National Library of Medicine/National Center for Biotechnology …
MeSH Now: automatic MeSH indexing at PubMed scale via learning to rank
Y Mao, Z Lu - Journal of biomedical semantics, 2017 - Springer
Background MeSH indexing is the task of assigning relevant MeSH terms based on a
manual reading of scholarly publications by human indexers. The task is highly important for …
manual reading of scholarly publications by human indexers. The task is highly important for …
TREC genomics special issue overview
W Hersh, E Voorhees - Information Retrieval, 2009 - Springer
Recent advances in biotechnology have changed the fundamental nature of biological
research. Whereas scientists used to be able to manage their modest amount of …
research. Whereas scientists used to be able to manage their modest amount of …