Genomics of circadian rhythms in health and disease

F Rijo-Ferreira, JS Takahashi - Genome medicine, 2019 - Springer
Circadian clocks are endogenous oscillators that control 24-h physiological and behavioral
processes. The central circadian clock exerts control over myriad aspects of mammalian …

Spatiotemporal metabolic liver zonation and consequences on pathophysiology

T Martini, F Naef, JS Tchorz - Annual Review of Pathology …, 2023 - annualreviews.org
Hepatocytes are the main workers in the hepatic factory, managing metabolism of nutrients
and xenobiotics, production and recycling of proteins, and glucose and lipid homeostasis …

Homeostasis control in health and disease by the unfolded protein response

D Acosta-Alvear, JM Harnoss, P Walter… - … Reviews Molecular Cell …, 2024 - nature.com
Cells rely on the endoplasmic reticulum (ER) to fold and assemble newly synthesized
transmembrane and secretory proteins—essential for cellular structure–function and for both …

CircaCompare: a method to estimate and statistically support differences in mesor, amplitude and phase, between circadian rhythms

R Parsons, R Parsons, N Garner, H Oster… - …, 2020 - academic.oup.com
Motivation A fundamental interest in chronobiology is to compare patterns between groups
of rhythmic data. However, many existing methods are ill-equipped to derive statements …

Metabolic enzyme PFKFB4 activates transcriptional coactivator SRC-3 to drive breast cancer

S Dasgupta, K Rajapakshe, B Zhu, BC Nikolai, P Yi… - Nature, 2018 - nature.com
Alterations in both cell metabolism and transcriptional programs are hallmarks of cancer that
sustain rapid proliferation and metastasis. However, the mechanisms that control the …

[HTML][HTML] The still dark side of the moon: molecular mechanisms of lunar-controlled rhythms and clocks

G Andreatta, K Tessmar-Raible - Journal of Molecular Biology, 2020 - Elsevier
Starting with the beginning of the last century, a multitude of scientific studies has
documented that the lunar cycle times behaviors and physiology in many organisms. It is …

Four-dimensional nuclear speckle phase separation dynamics regulate proteostasis

W Dion, H Ballance, J Lee, Y Pan, S Irfan… - Science …, 2022 - science.org
Phase separation and biorhythms control biological processes in the spatial and temporal
dimensions, respectively, but mechanisms of four-dimensional integration remain elusive …

Is REDD1 a metabolic double agent? Lessons from physiology and pathology

FA Britto, K Dumas, S Giorgetti-Peraldi… - … of Physiology-Cell …, 2020 - journals.physiology.org
The Akt/mechanistic target of rapamycin (mTOR) signaling pathway governs macromolecule
synthesis, cell growth, and metabolism in response to nutrients and growth factors …

XBP1 links the 12-hour clock to NAFLD and regulation of membrane fluidity and lipid homeostasis

H Meng, NM Gonzales, DM Lonard, N Putluri… - Nature …, 2020 - nature.com
A distinct 12-hour clock exists in addition to the 24-hour circadian clock to coordinate
metabolic and stress rhythms. Here, we show that liver-specific ablation of X-box binding …

12-h clock regulation of genetic information flow by XBP1s

Y Pan, H Ballance, H Meng, N Gonzalez, SM Kim… - PLoS …, 2020 - journals.plos.org
Our group recently characterized a cell-autonomous mammalian 12-h clock independent
from the circadian clock, but its function and mechanism of regulation remain poorly …