Multi-omics integration in biomedical research–A metabolomics-centric review

MA Wörheide, J Krumsiek, G Kastenmüller… - Analytica chimica …, 2021 - Elsevier
Recent advances in high-throughput technologies have enabled the profiling of multiple
layers of a biological system, including DNA sequence data (genomics), RNA expression …

Melatonin in type 2 diabetes mellitus and obesity

A Karamitri, R Jockers - Nature Reviews Endocrinology, 2019 - nature.com
Despite considerable advances in the past few years, obesity and type 2 diabetes mellitus
(T2DM) remain two major challenges for public health systems globally. In the past 9 years …

Analysis of rare genetic variation underlying cardiometabolic diseases and traits among 200,000 individuals in the UK Biobank

SJ Jurgens, SH Choi, VN Morrill, M Chaffin… - Nature …, 2022 - nature.com
Cardiometabolic diseases are the leading cause of death worldwide. Despite a known
genetic component, our understanding of these diseases remains incomplete. Here, we …

Dynamic incorporation of multiple in silico functional annotations empowers rare variant association analysis of large whole-genome sequencing studies at scale

X Li, Z Li, H Zhou, SM Gaynor, Y Liu, H Chen, R Sun… - Nature …, 2020 - nature.com
Large-scale whole-genome sequencing studies have enabled the analysis of rare variants
(RVs) associated with complex phenotypes. Commonly used RV association tests have …

Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine

P Gormley, V Anttila, BS Winsvold, P Palta, T Esko… - Nature …, 2016 - nature.com
Migraine is a debilitating neurological disorder affecting around one in seven people
worldwide, but its molecular mechanisms remain poorly understood. There is some debate …

Systematic identification of trans eQTLs as putative drivers of known disease associations

HJ Westra, MJ Peters, T Esko, H Yaghootkar… - Nature …, 2013 - nature.com
Identifying the downstream effects of disease-associated SNPs is challenging. To help
overcome this problem, we performed expression quantitative trait locus (eQTL) meta …

Efficient multivariate linear mixed model algorithms for genome-wide association studies

X Zhou, M Stephens - Nature methods, 2014 - nature.com
Multivariate linear mixed models (mvLMMs) are powerful tools for testing associations
between single-nucleotide polymorphisms and multiple correlated phenotypes while …

The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study

YF Pei, YZ Liu, XL Yang, H Zhang, GJ Feng… - Communications …, 2020 - nature.com
Appendicular lean mass (ALM) is a heritable trait associated with loss of lean muscle mass
and strength, or sarcopenia, but its genetic determinants are largely unknown. Here we …

An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations

V Segura, BJ Vilhjálmsson, A Platt, A Korte, Ü Seren… - Nature …, 2012 - nature.com
Population structure causes genome-wide linkage disequilibrium between unlinked loci,
leading to statistical confounding in genome-wide association studies. Mixed models have …

Population structure in genetic studies: Confounding factors and mixed models

JH Sul, LS Martin, E Eskin - PLoS genetics, 2018 - journals.plos.org
A genome-wide association study (GWAS) seeks to identify genetic variants that contribute
to the development and progression of a specific disease. Over the past 10 years, new …