Accelerating ODE-based simulation of general and heterogeneous biophysical models using a GPU

T Okuyama, M Okita, T Abe, Y Asai… - … on Parallel and …, 2013 - ieeexplore.ieee.org
Flint is a simulator that numerically integrates heterogeneous biophysical models described
by a large set of ordinary differential equations. It uses an internal bytecode representation …

Cardiac excitation modeling: HDL coder optimization towards FPGA stand-alone implementation

N Othman, F Mahmud, MH Jabbar… - … Conference on Control …, 2014 - ieeexplore.ieee.org
The aim of this paper is to discuss the optimization of the hardware description language
(HDL) design using fixed-point optimization and speed optimization through a pipelining …

Novel therapeutic compounds for prostate adenocarcinoma treatment: An analysis using bioinformatic approaches and the CMap database

K Li, J Fan, X Qin, Q Wei - Medicine, 2020 - journals.lww.com
Methods: Differentially expressed genes were obtained from the Gene Expression Omnibus
database and submitted into the Connectivity Map database for the detection of potentially …

[HTML][HTML] Simulating waves, chaos and synchronization with a microcontroller

AJ Welsh, C Delgado, C Lee-Trimble… - … Journal of Nonlinear …, 2019 - pubs.aip.org
The spatiotemporal dynamics of complex systems have been studied traditionally and
visualized numerically using high-end computers. However, due to advances in …

FPGA implementation for cardiac excitation-conduction simulation based on FitzHugh-Nagumo model

NA Adon, MH Jabbar, F Mahmud - 5th International Conference on …, 2015 - Springer
The paper examines a method for development of a Field Programmable Gate Array
(FPGAs)-based implementation of hardware model for the electrical excitation-conduction in …

FPGA-in-the-Loop simulation of cardiac excitation modeling towards real-time simulation

N Othman, MH Jabbar, AK Mahamad… - … Conference on Biomedical …, 2015 - Springer
Cardiac excitation is a fundamental mechanism within the heart's function. One way to
understand this mechanism is by using numerical modeling techniques. However, an …

Luo Rudy Phase I excitation modeling towards HDL coder implementation for real-time simulation

N Othman, MH Jabbar, AK Mahamad… - 2014 5th International …, 2014 - ieeexplore.ieee.org
This paper presents the simulation study of nonlinear dynamic of cardiac excitation based
on Luo Rudy Phase I (LR-I) model towards numerical solutions of ordinary differential …

FPGA-in-the-loop co-simulation of reentrant arrhythmia mechanism in one dimensional (1D) ring-shaped based on FitzHugh-Nagumo model

NA Adon, F Mahmud, MH Jabbar… - 2014 IEEE International …, 2014 - ieeexplore.ieee.org
This paper presents the simulation of reentrant excitation-conduction of cardiac cells
realized by coupling 80 active circuits in one dimensional (1D) ring-shaped based on …

[PDF][PDF] Cardiac Excitation-Conduction Modeling using MATLAB/Simulink for Real Time FPGA Implementation

NAB Adon, FB Mahmud - mint.uthm.edu.my
Electrical excitations of cardiac cell membranes and their propagation in the heart tissue
control the mechanical contractions of the cells through the cardiac excitation-contraction …

[PDF][PDF] Voltage Clamp Simulation of Cardiac Excitation: Field Programmable Gate Array (FPGA) Implementation

MH Jabbar, NA Adon - core.ac.uk
This paper presents the simulation study of voltage clamp technique that enables to analyze
current-voltage (IV) characteristics of ion currents based on Luo-Rudy Phase-I (LR-I) model …