A tutorial review: Metabolomics and partial least squares-discriminant analysis–a marriage of convenience or a shotgun wedding

PS Gromski, H Muhamadali, DI Ellis, Y Xu, E Correa… - Analytica chimica …, 2015 - Elsevier
The predominance of partial least squares-discriminant analysis (PLS-DA) used to analyze
metabolomics datasets (indeed, it is the most well-known tool to perform classification and …

Navigating freely-available software tools for metabolomics analysis

R Spicer, RM Salek, P Moreno, D Cañueto… - Metabolomics, 2017 - Springer
Introduction The field of metabolomics has expanded greatly over the past two decades,
both as an experimental science with applications in many areas, as well as in regards to …

NOREVA: normalization and evaluation of MS-based metabolomics data

B Li, J Tang, Q Yang, S Li, X Cui, Y Li… - Nucleic acids …, 2017 - academic.oup.com
Diverse forms of unwanted signal variations in mass spectrometry-based metabolomics data
adversely affect the accuracies of metabolic profiling. A variety of normalization methods …

ANPELA: analysis and performance assessment of the label-free quantification workflow for metaproteomic studies

J Tang, J Fu, Y Wang, B Li, Y Li, Q Yang… - Briefings in …, 2020 - academic.oup.com
Label-free quantification (LFQ) with a specific and sequentially integrated workflow of
acquisition technique, quantification tool and processing method has emerged as the …

Recommended strategies for spectral processing and post-processing of 1D 1H-NMR data of biofluids with a particular focus on urine

AH Emwas, E Saccenti, X Gao, RT McKay… - Metabolomics, 2018 - Springer
Abstract 1 H NMR spectra from urine can yield information-rich data sets that offer important
insights into many biological and biochemical phenomena. However, the quality and utility …

[HTML][HTML] Application of metabolomics to assess milk quality and traceability

G Rocchetti, TF O'Callaghan - Current Opinion in Food Science, 2021 - Elsevier
Milk is a foodstuff widely consumed around the world originating from a variety of different
species, animal management and production systems. In recent years, consumers have …

Metabolomics of plant root exudates: From sample preparation to data analysis

MA Salem, JY Wang, S Al-Babili - Frontiers in Plant Science, 2022 - frontiersin.org
Plants release a set of chemical compounds, called exudates, into the rhizosphere, under
normal conditions and in response to environmental stimuli and surrounding soil organisms …

Pharmacometabonomics: data processing and statistical analysis

J Fu, Y Zhang, J Liu, X Lian, J Tang… - Briefings in …, 2021 - academic.oup.com
Individual variations in drug efficacy, side effects and adverse drug reactions are still
challenging that cannot be ignored in drug research and development. The aim of …

Evaluating machine learning methods of analyzing multiclass metabolomics

Y Gong, W Ding, P Wang, Q Wu, X Yao… - Journal of Chemical …, 2023 - ACS Publications
Multiclass metabolomic studies have become popular for revealing the differences in
multiple stages of complex diseases, various lifestyles, or the effects of specific treatments. In …

Data standards can boost metabolomics research, and if there is a will, there is a way

P Rocca-Serra, RM Salek, M Arita, E Correa… - Metabolomics, 2016 - Springer
Thousands of articles using metabolomics approaches are published every year. With the
increasing amounts of data being produced, mere description of investigations as text in …