[HTML][HTML] A blood atlas of COVID-19 defines hallmarks of disease severity and specificity

DJ Ahern, Z Ai, M Ainsworth, C Allan, A Allcock… - Cell, 2022 - cell.com
Treatment of severe COVID-19 is currently limited by clinical heterogeneity and incomplete
description of specific immune biomarkers. We present here a comprehensive multi-omic …

System-wide analysis of RNA and protein subcellular localization dynamics

E Villanueva, T Smith, M Pizzinga, M Elzek… - Nature …, 2024 - nature.com
Although the subcellular dynamics of RNA and proteins are key determinants of cell
homeostasis, their characterization is still challenging. Here we present an integrative …

MAIT cell activation augments adenovirus vector vaccine immunogenicity

NM Provine, A Amini, LC Garner, AJ Spencer, C Dold… - Science, 2021 - science.org
Mucosal-associated invariant T (MAIT) cells are innate sensors of viruses and can augment
early immune responses and contribute to protection. We hypothesized that MAIT cells may …

Nanopore sequencing of single-cell transcriptomes with scCOLOR-seq

M Philpott, J Watson, A Thakurta, T Brown Jr… - Nature …, 2021 - nature.com
Here we describe single-cell corrected long-read sequencing (scCOLOR-seq), which
enables error correction of barcode and unique molecular identifier oligonucleotide …

Correcting PCR amplification errors in unique molecular identifiers to generate accurate numbers of sequencing molecules

J Sun, M Philpott, D Loi, S Li, P Monteagudo-Mesas… - Nature …, 2024 - nature.com
Unique molecular identifiers are random oligonucleotide sequences that remove PCR
amplification biases. However, the impact that PCR associated sequencing errors have on …

Interleukin-17A Causes Osteoarthritis-Like Transcriptional Changes in Human Osteoarthritis-Derived Chondrocytes and Synovial Fibroblasts In Vitro

JY Mimpen, MJ Baldwin, AP Cribbs, M Philpott… - Frontiers in …, 2021 - frontiersin.org
Increased interleukin (IL)-17A has been identified in joints affected by osteoarthritis (OA), but
it is unclear how IL-17A, and its family members IL-17AF and IL-17F, can contribute to …

Humanoid robots to mechanically stress human cells grown in soft bioreactors

PA Mouthuy, S Snelling, R Hostettler… - Communications …, 2022 - nature.com
For more than 20 years, robotic bioreactor systems have facilitated the growth of tissue-
engineered constructs using mechanical stimulation. However, we are still unable to …

Histone H3K27me3 demethylases regulate human Th17 cell development and effector functions by impacting on metabolism

AP Cribbs, S Terlecki-Zaniewicz, M Philpott… - Proceedings of the …, 2020 - pnas.org
T helper (Th) cells are CD4+ effector T cells that play a critical role in immunity by sha**
the inflammatory cytokine environment in a variety of physiological and pathological …

[HTML][HTML] Disturbed, diffuse, or just missing?-A global study of the HI content of Hickson compact groups

MG Jones, L Verdes-Montenegro, J Moldón… - Astronomy & …, 2023 - aanda.org
Context. Hickson compact groups (HCGs) are dense configurations of four to ten galaxies,
whose HI morphology appears to follow an evolutionary sequence of three phases, with gas …

Panpipes: a pipeline for multiomic single-cell and spatial transcriptomic data analysis

F Curion, C Rich-Griffin, D Agarwal, S Ouologuem… - Genome Biology, 2024 - Springer
Single-cell multiomic analysis of the epigenome, transcriptome, and proteome allows for
comprehensive characterization of the molecular circuitry that underpins cell identity and …