Deep reticulation: the long legacy of hybridization in vascular plant evolution

GW Stull, KK Pham, PS Soltis, DE Soltis - The Plant Journal, 2023 - Wiley Online Library
Hybridization has long been recognized as a fundamental evolutionary process in plants
but, until recently, our understanding of its phylogenetic distribution and biological …

Practical considerations for plant phylogenomics

MR McKain, MG Johnson… - Applications in plant …, 2018 - Wiley Online Library
The past decade has seen a major breakthrough in our ability to easily and inexpensively
sequence genome‐scale data from diverse lineages. The development of high‐throughput …

A well-supported nuclear phylogeny of Poaceae and implications for the evolution of C4 photosynthesis

W Huang, L Zhang, JT Columbus, Y Hu, Y Zhao… - Molecular Plant, 2022 - cell.com
Poaceae (the grasses) includes rice, maize, wheat, and other crops, and is the most
economically important angiosperm family. Poaceae is also one of the largest plant families …

Nuclear phylotranscriptomics and phylogenomics support numerous polyploidization events and hypotheses for the evolution of rhizobial nitrogen-fixing symbiosis in …

Y Zhao, R Zhang, KW Jiang, J Qi, Y Hu, J Guo, R Zhu… - Molecular plant, 2021 - cell.com
Fabaceae are the third largest angiosperm family, with 765 genera and∼ 19 500 species.
They are important both economically and ecologically, and global Fabaceae crops are …

Genome sequencing reveals the genetic architecture of heterostyly and domestication history of common buckwheat

JA Fawcett, R Takeshima, S Kikuchi, E Yazaki… - Nature Plants, 2023 - nature.com
Common buckwheat, Fagopyrum esculentum, is an orphan crop domesticated in southwest
China that exhibits heterostylous self-incompatibility. Here we present chromosome-scale …

Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms

GW Stull, XJ Qu, C Parins-Fukuchi, YY Yang, JB Yang… - Nature Plants, 2021 - nature.com
Inferring the intrinsic and extrinsic drivers of species diversification and phenotypic disparity
across the tree of life is a major challenge in evolutionary biology. In green plants, polyploidy …

Phylotranscriptomics resolves the phylogeny of Pooideae and uncovers factors for their adaptive evolution

L Zhang, X Zhu, Y Zhao, J Guo, T Zhang… - Molecular Biology …, 2022 - academic.oup.com
Adaptation to cool climates has occurred several times in different angiosperm groups.
Among them, Pooideae, the largest grass subfamily with∼ 3,900 species including wheat …

Phylotranscriptomics in Cucurbitaceae reveal multiple whole-genome duplications and key morphological and molecular innovations

J Guo, W Xu, Y Hu, J Huang, Y Zhao, L Zhang… - Molecular Plant, 2020 - cell.com
The ability of climbing plants to grow upward along others to reach the canopy for
photosynthesis is hypothesized as a key innovation in flowering plants. Most members of the …

The genome of the recretohalophyte Limonium bicolor provides insights into salt gland development and salinity adaptation during terrestrial evolution

F Yuan, X Wang, B Zhao, X Xu, M Shi, B Leng, X Dong… - Molecular Plant, 2022 - cell.com
Halophytes have evolved specialized strategies to cope with high salinity. The extreme
halophyte sea lavender (Limonium bicolor) lacks trichomes but possesses salt glands on its …

Multiple large-scale gene and genome duplications during the evolution of hexapods

Z Li, GP Tiley, SR Galuska… - Proceedings of the …, 2018 - National Acad Sciences
Polyploidy or whole genome duplication (WGD) is a major contributor to genome evolution
and diversity. Although polyploidy is recognized as an important component of plant …