A survey of Bayesian Network structure learning
Abstract Bayesian Networks (BNs) have become increasingly popular over the last few
decades as a tool for reasoning under uncertainty in fields as diverse as medicine, biology …
decades as a tool for reasoning under uncertainty in fields as diverse as medicine, biology …
Integrated BATF transcriptional network regulates suppressive intratumoral regulatory T cells
Human regulatory T cells (Tregs) are crucial regulators of tissue repair, autoimmune
diseases, and cancer. However, it is challenging to inhibit the suppressive function of Tregs …
diseases, and cancer. However, it is challenging to inhibit the suppressive function of Tregs …
Causal inference with latent variables: Recent advances and future prospectives
Causality lays the foundation for the trajectory of our world. Causal inference (CI), which
aims to infer intrinsic causal relations among variables of interest, has emerged as a crucial …
aims to infer intrinsic causal relations among variables of interest, has emerged as a crucial …
Greedy relaxations of the sparsest permutation algorithm
There has been an increasing interest in methods that exploit permutation reasoning to
search for directed acyclic causal models, including the “Ordering Search''of Teyssier and …
search for directed acyclic causal models, including the “Ordering Search''of Teyssier and …
Time series deconfounder: Estimating treatment effects over time in the presence of hidden confounders
The estimation of treatment effects is a pervasive problem in medicine. Existing methods for
estimating treatment effects from longitudinal observational data assume that there are no …
estimating treatment effects from longitudinal observational data assume that there are no …
Mixed graphical models for integrative causal analysis with application to chronic lung disease diagnosis and prognosis
Motivation Integration of data from different modalities is a necessary step for multi-scale
data analysis in many fields, including biomedical research and systems biology. Directed …
data analysis in many fields, including biomedical research and systems biology. Directed …
Lipidomic signatures align with inflammatory patterns and outcomes in critical illness
Alterations in lipid metabolism have the potential to be markers as well as drivers of
pathobiology of acute critical illness. Here, we took advantage of the temporal precision …
pathobiology of acute critical illness. Here, we took advantage of the temporal precision …
Feasibility of lung cancer prediction from low-dose CT scan and smoking factors using causal models
Introduction Low-dose CT (LDCT) is currently used in lung cancer screening of high-risk
populations for early lung cancer diagnosis. However, 96% of individuals with detected …
populations for early lung cancer diagnosis. However, 96% of individuals with detected …
Evaluation of causal structure learning methods on mixed data types
Causal structure learning algorithms are very important in many fields, including biomedical
sciences, because they can uncover the underlying causal network structure from …
sciences, because they can uncover the underlying causal network structure from …
Respiratory microbiome profiling for etiologic diagnosis of pneumonia in mechanically ventilated patients
Etiologic diagnosis of bacterial pneumonia relies on identification of causative pathogens by
cultures, which require extended incubation periods and have limited sensitivity. Next …
cultures, which require extended incubation periods and have limited sensitivity. Next …