A survey of Bayesian Network structure learning

NK Kitson, AC Constantinou, Z Guo, Y Liu… - Artificial Intelligence …, 2023 - Springer
Abstract Bayesian Networks (BNs) have become increasingly popular over the last few
decades as a tool for reasoning under uncertainty in fields as diverse as medicine, biology …

Integrated BATF transcriptional network regulates suppressive intratumoral regulatory T cells

F Shan, AR Cillo, C Cardello, DY Yuan… - Science …, 2023 - science.org
Human regulatory T cells (Tregs) are crucial regulators of tissue repair, autoimmune
diseases, and cancer. However, it is challenging to inhibit the suppressive function of Tregs …

Causal inference with latent variables: Recent advances and future prospectives

Y Zhu, Y He, J Ma, M Hu, S Li, J Li - Proceedings of the 30th ACM …, 2024 - dl.acm.org
Causality lays the foundation for the trajectory of our world. Causal inference (CI), which
aims to infer intrinsic causal relations among variables of interest, has emerged as a crucial …

Greedy relaxations of the sparsest permutation algorithm

WY Lam, B Andrews, J Ramsey - Uncertainty in Artificial …, 2022 - proceedings.mlr.press
There has been an increasing interest in methods that exploit permutation reasoning to
search for directed acyclic causal models, including the “Ordering Search''of Teyssier and …

Time series deconfounder: Estimating treatment effects over time in the presence of hidden confounders

I Bica, A Alaa… - … conference on machine …, 2020 - proceedings.mlr.press
The estimation of treatment effects is a pervasive problem in medicine. Existing methods for
estimating treatment effects from longitudinal observational data assume that there are no …

Mixed graphical models for integrative causal analysis with application to chronic lung disease diagnosis and prognosis

AJ Sedgewick, K Buschur, I Shi, JD Ramsey… - …, 2019 - academic.oup.com
Motivation Integration of data from different modalities is a necessary step for multi-scale
data analysis in many fields, including biomedical research and systems biology. Directed …

Lipidomic signatures align with inflammatory patterns and outcomes in critical illness

J Wu, A Cyr, DS Gruen, TC Lovelace, PV Benos… - Nature …, 2022 - nature.com
Alterations in lipid metabolism have the potential to be markers as well as drivers of
pathobiology of acute critical illness. Here, we took advantage of the temporal precision …

Feasibility of lung cancer prediction from low-dose CT scan and smoking factors using causal models

VK Raghu, W Zhao, J Pu, JK Leader, R Wang… - Thorax, 2019 - thorax.bmj.com
Introduction Low-dose CT (LDCT) is currently used in lung cancer screening of high-risk
populations for early lung cancer diagnosis. However, 96% of individuals with detected …

Evaluation of causal structure learning methods on mixed data types

VK Raghu, A Poon, PV Benos - Proceedings of 2018 ACM …, 2018 - proceedings.mlr.press
Causal structure learning algorithms are very important in many fields, including biomedical
sciences, because they can uncover the underlying causal network structure from …

Respiratory microbiome profiling for etiologic diagnosis of pneumonia in mechanically ventilated patients

GD Kitsios, A Fitch, DV Manatakis, SF Rapport… - Frontiers in …, 2018 - frontiersin.org
Etiologic diagnosis of bacterial pneumonia relies on identification of causative pathogens by
cultures, which require extended incubation periods and have limited sensitivity. Next …