Information retrieval and text mining technologies for chemistry

M Krallinger, O Rabal, A Lourenco, J Oyarzabal… - Chemical …, 2017‏ - ACS Publications
Efficient access to chemical information contained in scientific literature, patents, technical
reports, or the web is a pressing need shared by researchers and patent attorneys from …

A survey on extraction of causal relations from natural language text

J Yang, SC Han, J Poon - Knowledge and Information Systems, 2022‏ - Springer
As an essential component of human cognition, cause–effect relations appear frequently in
text, and curating cause–effect relations from text helps in building causal networks for …

A neural joint model for entity and relation extraction from biomedical text

F Li, M Zhang, G Fu, D Ji - BMC bioinformatics, 2017‏ - Springer
Background Extracting biomedical entities and their relations from text has important
applications on biomedical research. Previous work primarily utilized feature-based pipeline …

Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task

CH Wei, Y Peng, R Leaman, AP Davis, CJ Mattingly… - Database, 2016‏ - academic.oup.com
Manually curating chemicals, diseases and their relationships is significantly important to
biomedical research, but it is plagued by its high cost and the rapid growth of the biomedical …

Extraction of relations between genes and diseases from text and large-scale data analysis: implications for translational research

À Bravo, J Piñero, N Queralt-Rosinach, M Rautschka… - BMC …, 2015‏ - Springer
Background Current biomedical research needs to leverage and exploit the large amount of
information reported in scientific publications. Automated text mining approaches, in …

Adverse drug events and medication relation extraction in electronic health records with ensemble deep learning methods

F Christopoulou, TT Tran, SK Sahu… - Journal of the …, 2020‏ - academic.oup.com
Objective Identification of drugs, associated medication entities, and interactions among
them are crucial to prevent unwanted effects of drug therapy, known as adverse drug events …

[HTML][HTML] Causal relationship extraction from biomedical text using deep neural models: A comprehensive survey

A Akkasi, MF Moens - Journal of biomedical informatics, 2021‏ - Elsevier
The identification of causal relationships between events or entities within biomedical texts
is of great importance for creating scientific knowledge bases and is also a fundamental …

Adverse drug event detection in tweets with semi-supervised convolutional neural networks

K Lee, A Qadir, SA Hasan, V Datla, A Prakash… - Proceedings of the 26th …, 2017‏ - dl.acm.org
Current Adverse Drug Events (ADE) surveillance systems are often associated with a
sizable time lag before such events are published. Online social media such as Twitter could …

[HTML][HTML] PKDE4J: Entity and relation extraction for public knowledge discovery

M Song, WC Kim, D Lee, GE Heo, KY Kang - Journal of biomedical …, 2015‏ - Elsevier
Due to an enormous number of scientific publications that cannot be handled manually,
there is a rising interest in text-mining techniques for automated information extraction …

[HTML][HTML] Clinical relation extraction toward drug safety surveillance using electronic health record narratives: classical learning versus deep learning

T Munkhdalai, F Liu, H Yu - JMIR public health and …, 2018‏ - publichealth.jmir.org
Background: Medication and adverse drug event (ADE) information extracted from electronic
health record (EHR) notes can be a rich resource for drug safety surveillance. Existing …