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Data compression for sequencing data
S Deorowicz, S Grabowski - Algorithms for Molecular Biology, 2013 - Springer
Post-Sanger sequencing methods produce tons of data, and there is a generalagreement
that the challenge to store and process them must be addressedwith data compression. In …
that the challenge to store and process them must be addressedwith data compression. In …
High-throughput DNA sequence data compression
The exponential growth of high-throughput DNA sequence data has posed great challenges
to genomic data storage, retrieval and transmission. Compression is a critical tool to address …
to genomic data storage, retrieval and transmission. Compression is a critical tool to address …
A survey on data compression methods for biological sequences
The ever increasing growth of the production of high-throughput sequencing data poses a
serious challenge to the storage, processing and transmission of these data. As frequently …
serious challenge to the storage, processing and transmission of these data. As frequently …
Efficient DNA sequence compression with neural networks
Background The increasing production of genomic data has led to an intensified need for
models that can cope efficiently with the lossless compression of DNA sequences. Important …
models that can cope efficiently with the lossless compression of DNA sequences. Important …
MFCompress: a compression tool for FASTA and multi-FASTA data
Motivation: The data deluge phenomenon is becoming a serious problem in most genomic
centers. To alleviate it, general purpose tools, such as gzip, are used to compress the data …
centers. To alleviate it, general purpose tools, such as gzip, are used to compress the data …
GReEn: a tool for efficient compression of genome resequencing data
Research in the genomic sciences is confronted with the volume of sequencing and
resequencing data increasing at a higher pace than that of data storage and communication …
resequencing data increasing at a higher pace than that of data storage and communication …
Biometric and emotion identification: An ECG compression based method
We present an innovative and robust solution to both biometric and emotion identification
using the electrocardiogram (ECG). The ECG represents the electrical signal that comes …
using the electrocardiogram (ECG). The ECG represents the electrical signal that comes …
Efficient compression of genomic sequences
The number of genomic sequences is growing substantially. Besides discarding part of the
data, the only efficient possibility for co** with this trend is data compression. We present …
data, the only efficient possibility for co** with this trend is data compression. We present …
The complexity landscape of viral genomes
Background Viruses are among the shortest yet highly abundant species that harbor
minimal instructions to infect cells, adapt, multiply, and exist. However, with the current …
minimal instructions to infect cells, adapt, multiply, and exist. However, with the current …
FQSqueezer: k-mer-based compression of sequencing data
S Deorowicz - Scientific reports, 2020 - nature.com
The amount of data produced by modern sequencing instruments that needs to be stored is
huge. Therefore it is not surprising that a lot of work has been done in the field of specialized …
huge. Therefore it is not surprising that a lot of work has been done in the field of specialized …